------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5169 1q0s_A) ( 115 1af7 ) 0.7642 0.7642 4.4822 ( 1 51 78) 0 0.7642 0.7642 17 17 ( 5169 1q0s_A) ( 439 1boo_A) 0.3529 0.3333 6.8356 ( 0 8 15) 0 0.7641 0.7218 17 18 ( 5169 1q0s_A) ( 800 1dct_A) 0.2353 0.2000 3.4539 ( 0 1 6) 0 0.7012 0.5979 17 20 ( 5169 1q0s_A) ( 869 1dl5_A) 0.2941 0.3124 8.5296 ( 0 6 10) 0 0.7052 0.7491 17 16 ( 5169 1q0s_A) ( 943 1dus_A) 0.7054 0.8560 3.6807 ( 1 34 66) 0 0.7054 0.8560 17 14 ( 5169 1q0s_A) ( 1179 1ej0_A) 0.6340 0.8516 3.7409 ( 2 24 55) 0 0.6340 0.8516 17 12 ( 5169 1q0s_A) ( 1384 1f3l_A) 0.4706 0.3200 3.4913 ( 0 12 28) 0 0.4706 0.3699 17 25 ( 5169 1q0s_A) ( 1596 1fp1_D) 0.7027 0.7458 5.6703 ( 2 41 66) 0 0.7027 0.7458 17 16 ( 5169 1q0s_A) ( 1598 1fp2_A) 0.7031 0.5987 3.4586 ( 2 40 66) 0 0.7031 0.5987 17 20 ( 5169 1q0s_A) ( 1708 1g38_A) 0.6359 0.3919 3.5499 ( 2 25 55) 0 0.6359 0.3919 17 28 ( 5169 1q0s_A) ( 1727 1g55_A) 0.2941 0.2500 4.2687 ( 0 4 10) 0 0.6497 0.5727 17 20 ( 5169 1q0s_A) ( 1737 1g60_A) 0.3529 0.4285 4.9787 ( 0 6 15) 0 0.7058 0.8569 17 14 ( 5169 1q0s_A) ( 1761 1g8a_A) 0.7024 0.6641 3.6659 ( 2 38 66) 0 0.7024 0.6641 17 18 ( 5169 1q0s_A) ( 2037 1h1d_A) 0.7058 0.7499 3.4356 ( 0 37 66) 0 0.7540 0.7981 17 16 ( 5169 1q0s_A) ( 2249 1hnn_A) 0.7052 0.6662 4.7156 ( 1 34 66) 0 0.7557 0.7154 17 18 ( 5169 1q0s_A) ( 2364 1i1n_A) 0.5882 0.6249 3.6621 ( 0 23 45) 0 0.7051 0.7489 17 16 ( 5169 1q0s_A) ( 2390 1i4w_A) 0.7056 0.5454 3.5757 ( 1 39 66) 0 0.7056 0.5454 17 22 ( 5169 1q0s_A) ( 2435 1i9g_A) 0.7058 0.5454 3.2049 ( 0 34 66) 0 0.7058 0.5454 17 22 ( 5169 1q0s_A) ( 2533 1im8_A) 0.7058 0.7499 3.2604 ( 0 31 66) 0 0.7638 0.8113 17 16 ( 5169 1q0s_A) ( 2545 1inl_A) 0.7640 0.5651 4.7898 ( 1 43 78) 0 0.7640 0.5651 17 23 ( 5169 1q0s_A) ( 2649 1ixk_A) 0.7057 0.5000 4.1556 ( 0 31 66) 0 0.7641 0.5416 17 24 ( 5169 1q0s_A) ( 2858 1jg1_A) 0.2353 0.2857 3.9548 ( 0 2 6) 0 0.7373 0.8628 17 14 ( 5169 1q0s_A) ( 3018 1jqe_A) 0.7055 0.5454 3.8891 ( 1 38 66) 0 0.7556 0.5884 17 22 ( 5169 1q0s_A) ( 3051 1jsx_A) 0.7055 0.7992 4.1317 ( 1 37 66) 0 0.7603 0.8584 17 15 ( 5169 1q0s_A) ( 3391 1kpg_A) 0.2941 0.2632 5.8833 ( 0 4 10) 0 0.7053 0.6313 17 19 ( 5169 1q0s_A) ( 3524 1l3i_A) 0.7049 0.8545 5.8683 ( 1 37 66) 0 0.7049 0.8545 17 14 ( 5169 1q0s_A) ( 3577 1l9k_A) 0.6359 0.6026 3.5580 ( 2 25 55) 0 0.6359 0.6026 17 18 ( 5169 1q0s_A) ( 3858 1m6e_X) 0.7014 0.6633 4.9313 ( 2 36 66) 0 0.7014 0.6633 17 18 ( 5169 1q0s_A) ( 3865 1m6y_A) 0.7057 0.7498 3.8337 ( 0 32 66) 0 0.7057 0.7498 17 16 ( 5169 1q0s_A) ( 3944 1mjf_A) 0.7640 0.5415 5.1681 ( 0 44 78) 0 0.7640 0.5415 17 24 ( 5169 1q0s_A) ( 4204 1ne2_A) 0.7057 0.8566 4.2560 ( 0 34 66) 0 0.7057 0.8566 17 14 ( 5169 1q0s_A) ( 4296 1nkv_A) 0.6860 0.6860 4.3713 ( 3 36 66) 0 0.6860 0.6860 17 17 ( 5169 1q0s_A) ( 4384 1nt2_A) 0.7012 0.6631 3.5713 ( 2 35 66) 0 0.7012 0.6631 17 18 ( 5169 1q0s_A) ( 4401 1nv8_A) 0.7000 0.6282 3.2743 ( 2 33 66) 0 0.7442 0.6722 17 19 ( 5169 1q0s_A) ( 4412 1nw3_A) 0.6470 0.5238 3.6673 ( 0 32 55) 0 0.7056 0.5937 17 21 ( 5169 1q0s_A) ( 4413 1nw6_A) 0.3529 0.3158 6.6769 ( 0 8 15) 0 0.7058 0.6315 17 19 ( 5169 1q0s_A) ( 4492 1o54_A) 0.7058 0.6000 3.2145 ( 0 34 66) 0 0.7058 0.6212 17 20 ( 5169 1q0s_A) ( 4567 1o9g_A) 0.7410 0.8243 4.2446 ( 3 38 78) 0 0.7410 0.8243 17 15 ( 5169 1q0s_A) ( 4860 1p1c_A) 0.7011 0.7435 4.3606 ( 2 35 66) 0 0.7049 0.7487 17 16 ( 5169 1q0s_A) ( 4936 1p91_A) 0.6464 0.6106 6.1557 ( 0 33 55) 0 0.6464 0.6106 17 18 ( 5169 1q0s_A) ( 5033 1pjz_A) 0.6677 0.7001 3.6305 ( 3 30 66) 0 0.6677 0.7001 17 16 ( 5169 1q0s_A) ( 5169 1q0s_A) 1.0000 1.0000 0.0000 ( 0 102 136) 0 1.0000 1.0000 17 17 ( 5169 1q0s_A) ( 5266 1qam_A) 0.7056 0.7496 3.4722 ( 1 38 66) 0 0.7056 0.7496 17 16 ( 5169 1q0s_A) ( 5509 1qzz_A) 0.7028 0.6298 3.6482 ( 2 39 66) 0 0.7054 0.6313 17 19 ( 5169 1q0s_A) ( 5639 1ri5_A) 0.7220 0.6298 4.5727 ( 4 43 78) 0 0.7220 0.6298 17 20 ( 5169 1q0s_A) ( 5650 1rjd_A) 0.2941 0.2273 5.4368 ( 0 4 10) 0 0.7910 0.6521 17 22 ( 5169 1q0s_A) ( 6005 1ufk_A) 0.7052 0.4999 4.5003 ( 1 32 66) 0 0.7491 0.5388 17 24 ( 5169 1q0s_A) ( 6027 1uir_A) 0.7056 0.4800 4.3464 ( 0 38 66) 0 0.7056 0.4800 17 25 ( 5169 1q0s_A) ( 6132 1uwv_A) 0.7058 0.4444 3.5426 ( 0 33 66) 0 0.7058 0.4444 17 27 ( 5169 1q0s_A) ( 6164 1v39 ) 0.6469 0.6110 4.5216 ( 0 25 55) 0 0.7041 0.6653 17 18 ( 5169 1q0s_A) ( 6352 1xva_A) 0.7000 0.6282 3.3409 ( 2 33 66) 0 0.7000 0.6282 17 19 ( 5169 1q0s_A) ( 6430 2dpm_A) 0.9351 0.9351 3.0705 ( 3 71 120) 0 0.9351 0.9351 17 17 ( 5169 1q0s_A) ( 6629 6mht_A) 0.2353 0.2000 3.8508 ( 0 3 6) 0 0.6397 0.5467 17 20 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