------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5509 1qzz_A) ( 115 1af7 ) 0.5789 0.6470 3.7100 ( 0 33 55) 0 0.6312 0.7053 19 17 ( 5509 1qzz_A) ( 439 1boo_A) 0.3043 0.3186 4.8389 ( 2 10 15) 0 0.6364 0.6666 19 18 ( 5509 1qzz_A) ( 800 1dct_A) 0.3684 0.3500 5.5615 ( 0 5 21) 0 0.6841 0.6499 19 20 ( 5509 1qzz_A) ( 869 1dl5_A) 0.5263 0.6250 3.2385 ( 0 25 45) 0 0.5789 0.6874 19 16 ( 5509 1qzz_A) ( 943 1dus_A) 0.6316 0.8571 2.4670 ( 0 38 66) 0 0.6316 0.8571 19 14 ( 5509 1qzz_A) ( 1179 1ej0_A) 0.5789 0.9163 3.3967 ( 0 25 55) 0 0.6311 0.9953 19 12 ( 5509 1qzz_A) ( 1384 1f3l_A) 0.6306 0.4798 6.9250 ( 1 41 66) 0 0.6306 0.4798 19 25 ( 5509 1qzz_A) ( 1596 1fp1_D) 0.8103 0.9310 5.0668 ( 7 93 120) 0 0.8103 0.9310 19 16 ( 5509 1qzz_A) ( 1598 1fp2_A) 0.9956 0.9466 3.6175 ( 5 142 171) 0 0.9956 0.9466 19 20 ( 5509 1qzz_A) ( 1708 1g38_A) 0.5263 0.3571 2.5918 ( 0 24 45) 0 0.5263 0.3571 19 28 ( 5509 1qzz_A) ( 1727 1g55_A) 0.3158 0.3000 4.9220 ( 0 6 15) 0 0.5789 0.5500 19 20 ( 5509 1qzz_A) ( 1737 1g60_A) 0.3157 0.4280 10.3075 ( 0 6 15) 0 0.6316 0.8570 19 14 ( 5509 1qzz_A) ( 1761 1g8a_A) 0.6315 0.6665 2.7478 ( 1 40 66) 0 0.6315 0.6665 19 18 ( 5509 1qzz_A) ( 2037 1h1d_A) 0.6087 0.7001 2.9792 ( 4 40 66) 0 0.6313 0.7494 19 16 ( 5509 1qzz_A) ( 2249 1hnn_A) 0.6835 0.7213 3.8047 ( 2 56 78) 0 0.6835 0.7213 19 18 ( 5509 1qzz_A) ( 2364 1i1n_A) 0.2632 0.3125 6.1251 ( 0 1 10) 0 0.5789 0.6874 19 16 ( 5509 1qzz_A) ( 2390 1i4w_A) 0.6314 0.5454 3.3962 ( 1 41 66) 0 0.6314 0.5454 19 22 ( 5509 1qzz_A) ( 2435 1i9g_A) 0.6316 0.5454 2.8998 ( 0 38 66) 0 0.6316 0.5454 19 22 ( 5509 1qzz_A) ( 2533 1im8_A) 0.6831 0.8098 2.7732 ( 2 48 78) 0 0.7334 0.8669 19 16 ( 5509 1qzz_A) ( 2545 1inl_A) 0.6315 0.5217 3.7556 ( 0 38 66) 0 0.6315 0.5217 19 23 ( 5509 1qzz_A) ( 2649 1ixk_A) 0.6782 0.5398 5.3164 ( 3 48 78) 0 0.6782 0.5398 19 24 ( 5509 1qzz_A) ( 2858 1jg1_A) 0.3158 0.4285 4.8669 ( 0 6 15) 0 0.6296 0.8483 19 14 ( 5509 1qzz_A) ( 3018 1jqe_A) 0.6800 0.5889 3.4859 ( 3 52 78) 0 0.7729 0.6737 19 22 ( 5509 1qzz_A) ( 3051 1jsx_A) 0.6332 0.7349 5.4854 ( 6 53 78) 0 0.6332 0.7999 19 15 ( 5509 1qzz_A) ( 3391 1kpg_A) 0.7399 0.7399 3.8235 ( 7 75 105) 0 0.7399 0.7399 19 19 ( 5509 1qzz_A) ( 3524 1l3i_A) 0.6313 0.8558 5.2992 ( 0 37 66) 0 0.6313 0.8558 19 14 ( 5509 1qzz_A) ( 3577 1l9k_A) 0.5789 0.6110 4.1193 ( 0 26 55) 0 0.5789 0.6110 19 18 ( 5509 1qzz_A) ( 3858 1m6e_X) 0.2632 0.2778 3.8930 ( 0 5 10) 0 0.6799 0.7029 19 18 ( 5509 1qzz_A) ( 3865 1m6y_A) 0.6315 0.7498 3.6491 ( 0 35 66) 0 0.6727 0.7865 19 16 ( 5509 1qzz_A) ( 3944 1mjf_A) 0.6315 0.5000 3.6643 ( 0 39 66) 0 0.6315 0.5000 19 24 ( 5509 1qzz_A) ( 4204 1ne2_A) 0.6315 0.8566 4.1180 ( 0 39 66) 0 0.6315 0.8566 19 14 ( 5509 1qzz_A) ( 4296 1nkv_A) 0.6394 0.6927 3.9161 ( 6 55 78) 0 0.6838 0.7640 19 17 ( 5509 1qzz_A) ( 4384 1nt2_A) 0.5789 0.6111 2.5652 ( 0 28 55) 0 0.6313 0.6663 19 18 ( 5509 1qzz_A) ( 4401 1nv8_A) 0.6315 0.6315 3.1221 ( 0 40 66) 0 0.6315 0.6315 19 19 ( 5509 1qzz_A) ( 4412 1nw3_A) 0.5982 0.5503 3.0969 ( 5 45 66) 0 0.6237 0.5666 19 21 ( 5509 1qzz_A) ( 4413 1nw6_A) 0.3158 0.3158 3.5618 ( 0 7 15) 0 0.6788 0.6788 19 19 ( 5509 1qzz_A) ( 4492 1o54_A) 0.6316 0.6000 2.6985 ( 0 38 66) 0 0.6316 0.6000 19 20 ( 5509 1qzz_A) ( 4567 1o9g_A) 0.5789 0.7332 3.4789 ( 0 33 55) 0 0.6312 0.7988 19 15 ( 5509 1qzz_A) ( 4860 1p1c_A) 0.6315 0.7498 3.6578 ( 0 36 66) 0 0.6315 0.7498 19 16 ( 5509 1qzz_A) ( 4936 1p91_A) 0.3158 0.3333 4.6296 ( 0 8 15) 0 0.6415 0.6682 19 18 ( 5509 1qzz_A) ( 5033 1pjz_A) 0.6315 0.7498 3.8074 ( 0 32 66) 0 0.6831 0.8098 19 16 ( 5509 1qzz_A) ( 5169 1q0s_A) 0.6298 0.7028 3.6482 ( 2 39 66) 0 0.6313 0.7054 19 17 ( 5509 1qzz_A) ( 5266 1qam_A) 0.6316 0.7500 2.6507 ( 0 42 66) 0 0.6316 0.7500 19 16 ( 5509 1qzz_A) ( 5509 1qzz_A) 1.0000 1.0000 0.0000 ( 0 152 171) 0 1.0000 1.0000 19 19 ( 5509 1qzz_A) ( 5639 1ri5_A) 0.6316 0.6000 2.6228 ( 0 37 66) 0 0.6316 0.6000 19 20 ( 5509 1qzz_A) ( 5650 1rjd_A) 0.7242 0.6302 5.8032 ( 4 58 91) 0 0.7289 0.6502 19 22 ( 5509 1qzz_A) ( 6005 1ufk_A) 0.6315 0.5000 3.4458 ( 0 38 66) 0 0.6315 0.5000 19 24 ( 5509 1qzz_A) ( 6027 1uir_A) 0.6315 0.4800 3.6567 ( 0 40 66) 0 0.6315 0.4800 19 25 ( 5509 1qzz_A) ( 6132 1uwv_A) 0.6316 0.4444 2.8752 ( 0 35 66) 0 0.6316 0.4444 19 27 ( 5509 1qzz_A) ( 6164 1v39 ) 0.5785 0.6105 4.2034 ( 1 25 55) 0 0.5787 0.6108 19 18 ( 5509 1qzz_A) ( 6352 1xva_A) 0.6831 0.6831 3.3815 ( 2 49 78) 0 0.6834 0.6834 19 19 ( 5509 1qzz_A) ( 6430 2dpm_A) 0.6315 0.7058 3.2333 ( 0 39 66) 0 0.7338 0.8183 19 17 ( 5509 1qzz_A) ( 6629 6mht_A) 0.2632 0.2500 4.6133 ( 0 5 10) 0 0.6314 0.5999 19 20 -------------------------------------------------------------------------------------------------------------------------