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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1043 1e5k_A)  ( 1043 1e5k_A)     1.0000   1.0000   0.0000 (   0   63   78)   0     1.0000   1.0000   13  13
( 1043 1e5k_A)  ( 1325 1ezi_A)     0.9226   0.7058   3.5985 (   0   50   66)   0     0.9226   0.7058   13  17
( 1043 1e5k_A)  ( 1590 1fo8_A)     0.8919   0.5198   4.2750 (   3   45   66)   0     0.8919   0.5198   13  23
( 1043 1e5k_A)  ( 1690 1g1l_A)     0.9007   0.5819   3.8639 (   5   59   78)   0     0.9007   0.5819   13  22
( 1043 1e5k_A)  ( 1776 1g97_A)     0.9521   0.6763   4.3932 (   4   59   78)   0     0.9521   0.6763   13  19
( 1043 1e5k_A)  ( 1787 1ga8_A)     0.8983   0.4988   4.4307 (   3   48   66)   0     0.8983   0.4988   13  24
( 1043 1e5k_A)  ( 2122 1h7e_A)     0.9496   0.6139   3.9125 (   4   58   78)   0     0.9819   0.6173   13  21
( 1043 1e5k_A)  ( 2402 1i52_A)     0.9007   0.7418   3.1200 (   3   49   66)   0     0.9007   0.7418   13  16
( 1043 1e5k_A)  ( 3068 1jv1_A)     0.9773   0.3937   5.4988 (   3   56   78)   0     0.9926   0.3939   13  33
( 1043 1e5k_A)  ( 3093 1jyk_A)     0.7830   0.6588   3.2003 (   5   47   66)   0     0.7830   0.6588   13  17
( 1043 1e5k_A)  ( 3466 1kws_A)     0.4615   0.3529   3.3783 (   0   12   15)   0     0.5383   0.4117   13  17
( 1043 1e5k_A)  ( 3651 1ll2_A)     0.8005   0.5713   3.4357 (   3   36   55)   0     0.8046   0.5721   13  19
( 1043 1e5k_A)  ( 4544 1o7q_A)     0.4615   0.3750   3.7123 (   0    9   15)   0     0.8449   0.6871   13  16
( 1043 1e5k_A)  ( 4719 1omz_A)     0.9223   0.5999   3.4665 (   1   46   66)   0     0.9223   0.5999   13  20
( 1043 1e5k_A)  ( 5159 1pzt_A)     0.6153   0.5333   3.6602 (   0   18   28)   0     0.6918   0.5998   13  15
( 1043 1e5k_A)  ( 5322 1qg8_A)     0.9217   0.6664   4.7788 (   0   42   66)   0     0.9217   0.6664   13  18
( 1043 1e5k_A)  ( 5476 1qwj_A)     0.9223   0.8566   3.3956 (   1   45   66)   0     0.9223   0.8566   13  14
( 1043 1e5k_A)  ( 5768 1s4n_A)     0.8892   0.4786   4.4059 (   3   44   66)   0     0.8892   0.4786   13  25
( 1043 1e5k_A)  ( 6228 1vh3_A)     0.9038   0.6286   3.2941 (   3   51   66)   0     0.9038   0.6286   13  19

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