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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1787 1ga8_A)  ( 1043 1e5k_A)     0.4988   0.8983   4.4307 (   3   48   66)   0     0.4988   0.8983   24  13
( 1787 1ga8_A)  ( 1325 1ezi_A)     0.5348   0.7296   5.3530 (   5   57   78)   0     0.5348   0.7296   24  17
( 1787 1ga8_A)  ( 1590 1fo8_A)     0.5915   0.6117   3.9172 (   8   71  105)   0     0.6051   0.6279   24  23
( 1787 1ga8_A)  ( 1690 1g1l_A)     0.6346   0.6800   5.0259 (   9   88  120)   0     0.6346   0.6800   24  22
( 1787 1ga8_A)  ( 1776 1g97_A)     0.5409   0.6817   4.1657 (   3   60   78)   0     0.5409   0.6817   24  19
( 1787 1ga8_A)  ( 1787 1ga8_A)     1.0000   1.0000   0.0000 (   0  245  276)   0     1.0000   1.0000   24  24
( 1787 1ga8_A)  ( 2122 1h7e_A)     0.6183   0.7015   5.5543 (   6   83  105)   0     0.6183   0.7015   24  21
( 1787 1ga8_A)  ( 2402 1i52_A)     0.4999   0.7495   4.6336 (   1   53   66)   0     0.4999   0.7495   24  16
( 1787 1ga8_A)  ( 3068 1jv1_A)     0.5408   0.3938   4.8052 (   3   59   78)   0     0.5826   0.4241   24  33
( 1787 1ga8_A)  ( 3093 1jyk_A)     0.5229   0.6166   4.1975 (   9   61   91)   0     0.5229   0.6166   24  17
( 1787 1ga8_A)  ( 3466 1kws_A)     0.3750   0.5294   2.6065 (   0   23   36)   0     0.4583   0.6467   24  17
( 1787 1ga8_A)  ( 3651 1ll2_A)     0.6836   0.8242   2.8860 (   9  102  136)   0     0.6836   0.8242   24  19
( 1787 1ga8_A)  ( 4544 1o7q_A)     0.5314   0.7465   3.3233 (   5   51   78)   0     0.5314   0.7465   24  16
( 1787 1ga8_A)  ( 4719 1omz_A)     0.5815   0.6575   3.1225 (   9   74  105)   0     0.6621   0.7508   24  20
( 1787 1ga8_A)  ( 5159 1pzt_A)     0.2500   0.4000   3.6687 (   0    7   15)   0     0.4455   0.6659   24  15
( 1787 1ga8_A)  ( 5322 1qg8_A)     0.5963   0.7350   4.8637 (   7   65  105)   0     0.6278   0.7612   24  18
( 1787 1ga8_A)  ( 5476 1qwj_A)     0.4997   0.8533   3.9773 (   2   48   66)   0     0.4997   0.8533   24  14
( 1787 1ga8_A)  ( 5768 1s4n_A)     0.6145   0.5914   3.9673 (   6   73  105)   0     0.6145   0.5914   24  25
( 1787 1ga8_A)  ( 6228 1vh3_A)     0.6080   0.7398   5.6162 (   8   86  105)   0     0.6080   0.7398   24  19

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