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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3068 1jv1_A)  ( 1043 1e5k_A)     0.3937   0.9773   5.4988 (   3   56   78)   0     0.3939   0.9926   33  13
( 3068 1jv1_A)  ( 1325 1ezi_A)     0.4241   0.8200   4.6435 (   3   72   91)   0     0.4241   0.8200   33  17
( 3068 1jv1_A)  ( 1590 1fo8_A)     0.1818   0.2609   7.2734 (   0    9   15)   0     0.4218   0.5647   33  23
( 3068 1jv1_A)  ( 1690 1g1l_A)     0.4851   0.6222   4.0905 (  15  107  136)   0     0.5030   0.6974   33  22
( 3068 1jv1_A)  ( 1776 1g97_A)     0.5700   0.9236   3.2966 (  10  128  171)   0     0.5700   0.9236   33  19
( 3068 1jv1_A)  ( 1787 1ga8_A)     0.3938   0.5408   4.8052 (   3   59   78)   0     0.4241   0.5826   33  24
( 3068 1jv1_A)  ( 2122 1h7e_A)     0.5391   0.8038   4.9275 (  10  117  153)   0     0.5391   0.8038   33  21
( 3068 1jv1_A)  ( 2402 1i52_A)     0.4239   0.8633   4.9606 (   4   74   91)   0     0.4240   0.8652   33  16
( 3068 1jv1_A)  ( 3068 1jv1_A)     1.0000   1.0000   0.0000 (   0  434  528)   0     1.0000   1.0000   33  33
( 3068 1jv1_A)  ( 3093 1jyk_A)     0.4423   0.6921   4.4385 (  10   78  105)   0     0.4423   0.7688   33  17
( 3068 1jv1_A)  ( 3466 1kws_A)     0.1818   0.3529   5.2030 (   0   11   15)   0     0.3879   0.6508   33  17
( 3068 1jv1_A)  ( 3651 1ll2_A)     0.3623   0.6117   6.9080 (   4   42   66)   0     0.3881   0.6303   33  19
( 3068 1jv1_A)  ( 4544 1o7q_A)     0.3938   0.8092   6.0460 (   2   55   78)   0     0.4240   0.8660   33  16
( 3068 1jv1_A)  ( 4719 1omz_A)     0.1818   0.3000   6.4477 (   0   11   15)   0     0.4845   0.7959   33  20
( 3068 1jv1_A)  ( 5159 1pzt_A)     0.1515   0.3332  10.2145 (   0    7   10)   0     0.3029   0.6596   33  15
( 3068 1jv1_A)  ( 5322 1qg8_A)     0.4241   0.7740   7.1726 (   2   59   91)   0     0.4531   0.8050   33  18
( 3068 1jv1_A)  ( 5476 1qwj_A)     0.4242   0.9988   4.0910 (   1   67   91)   0     0.4242   0.9988   33  14
( 3068 1jv1_A)  ( 5768 1s4n_A)     0.4524   0.5915   6.0131 (   6   74  105)   0     0.4814   0.6266   33  25
( 3068 1jv1_A)  ( 6228 1vh3_A)     0.4775   0.7523   3.8935 (  10   97  120)   0     0.4775   0.7575   33  19

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