-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 3466 1kws_A)  ( 1043 1e5k_A)     0.3529   0.4615   3.3783 (   0   12   15)   0     0.4117   0.5383   17  13
( 3466 1kws_A)  ( 1325 1ezi_A)     0.5294   0.5294   4.3565 (   0   26   36)   0     0.5328   0.5328   17  17
( 3466 1kws_A)  ( 1590 1fo8_A)     0.5882   0.4348   4.0920 (   0   29   45)   0     0.6014   0.4668   17  23
( 3466 1kws_A)  ( 1690 1g1l_A)     0.4706   0.3636   3.8695 (   0   21   28)   0     0.4928   0.4397   17  22
( 3466 1kws_A)  ( 1776 1g97_A)     0.4705   0.4210   4.6292 (   0   21   28)   0     0.4705   0.4210   17  19
( 3466 1kws_A)  ( 1787 1ga8_A)     0.5294   0.3750   2.6065 (   0   23   36)   0     0.6467   0.4583   17  24
( 3466 1kws_A)  ( 2122 1h7e_A)     0.5293   0.4285   4.6055 (   0   27   36)   0     0.8227   0.6664   17  21
( 3466 1kws_A)  ( 2402 1i52_A)     0.4706   0.5000   4.1174 (   0   21   28)   0     0.4706   0.5000   17  16
( 3466 1kws_A)  ( 3068 1jv1_A)     0.3529   0.1818   5.2030 (   0   11   15)   0     0.6508   0.3879   17  33
( 3466 1kws_A)  ( 3093 1jyk_A)     0.6017   0.6017   4.9974 (   4   34   55)   0     0.6017   0.6017   17  17
( 3466 1kws_A)  ( 3466 1kws_A)     1.0000   1.0000   0.0000 (   0  113  136)   0     1.0000   1.0000   17  17
( 3466 1kws_A)  ( 3651 1ll2_A)     0.6470   0.5789   3.5087 (   0   34   55)   0     0.6470   0.5789   17  19
( 3466 1kws_A)  ( 4544 1o7q_A)     0.5293   0.5623   5.4107 (   0   15   36)   0     0.5293   0.5623   17  16
( 3466 1kws_A)  ( 4719 1omz_A)     0.5882   0.5000   3.6858 (   0   29   45)   0     0.5882   0.5000   17  20
( 3466 1kws_A)  ( 5159 1pzt_A)     0.2941   0.3333   4.6893 (   0    6   10)   0     0.6466   0.7324   17  15
( 3466 1kws_A)  ( 5322 1qg8_A)     0.5882   0.5555   3.0598 (   0   30   45)   0     0.5982   0.5879   17  18
( 3466 1kws_A)  ( 5476 1qwj_A)     0.5293   0.6427   4.5250 (   0   25   36)   0     0.6936   0.8263   17  14
( 3466 1kws_A)  ( 5768 1s4n_A)     0.4107   0.2798   4.1857 (   1   13   21)   0     0.5819   0.4540   17  25
( 3466 1kws_A)  ( 6228 1vh3_A)     0.6706   0.6104   5.1885 (   4   41   66)   0     0.7911   0.7176   17  19

-------------------------------------------------------------------------------------------------------------------------