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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3651 1ll2_A)  ( 1043 1e5k_A)     0.5713   0.8005   3.4357 (   3   36   55)   0     0.5721   0.8046   19  13
( 3651 1ll2_A)  ( 1325 1ezi_A)     0.5713   0.6339   4.5218 (   3   36   55)   0     0.5713   0.6339   19  17
( 3651 1ll2_A)  ( 1590 1fo8_A)     0.6480   0.5687   3.8194 (   7   57   91)   0     0.6480   0.5687   19  23
( 3651 1ll2_A)  ( 1690 1g1l_A)     0.7110   0.6234   4.3980 (   5   59   91)   0     0.7110   0.6301   19  22
( 3651 1ll2_A)  ( 1776 1g97_A)     0.6363   0.6363   5.3075 (   6   54   78)   0     0.6363   0.6363   19  19
( 3651 1ll2_A)  ( 1787 1ga8_A)     0.8242   0.6836   2.8860 (   9  102  136)   0     0.8242   0.6836   19  24
( 3651 1ll2_A)  ( 2122 1h7e_A)     0.6306   0.5708   4.1043 (   2   46   66)   0     0.6823   0.6179   19  21
( 3651 1ll2_A)  ( 2402 1i52_A)     0.5850   0.6556   4.4170 (   6   49   66)   0     0.5850   0.6853   19  16
( 3651 1ll2_A)  ( 3068 1jv1_A)     0.6117   0.3623   6.9080 (   4   42   66)   0     0.6303   0.3881   19  33
( 3651 1ll2_A)  ( 3093 1jyk_A)     0.5196   0.5364   3.8307 (   8   46   78)   0     0.5196   0.5364   19  17
( 3651 1ll2_A)  ( 3466 1kws_A)     0.5789   0.6470   3.5087 (   0   34   55)   0     0.5789   0.6470   19  17
( 3651 1ll2_A)  ( 3651 1ll2_A)     1.0000   1.0000   0.0000 (   0  139  171)   0     1.0000   1.0000   19  19
( 3651 1ll2_A)  ( 4544 1o7q_A)     0.6314   0.7496   2.8990 (   1   37   66)   0     0.6835   0.8107   19  16
( 3651 1ll2_A)  ( 4719 1omz_A)     0.6089   0.5937   3.4138 (   8   57   91)   0     0.6511   0.6238   19  20
( 3651 1ll2_A)  ( 5159 1pzt_A)     0.3146   0.3962   3.8628 (   1    9   15)   0     0.5260   0.6658   19  15
( 3651 1ll2_A)  ( 5322 1qg8_A)     0.6839   0.7218   4.5257 (   1   43   78)   0     0.6839   0.7218   19  18
( 3651 1ll2_A)  ( 5476 1qwj_A)     0.5541   0.6930   4.2126 (   4   35   55)   0     0.5694   0.7457   19  14
( 3651 1ll2_A)  ( 5768 1s4n_A)     0.6707   0.5165   2.9611 (   4   51   78)   0     0.6707   0.5165   19  25
( 3651 1ll2_A)  ( 6228 1vh3_A)     0.6314   0.6314   4.6104 (   0   47   66)   0     0.6314   0.6314   19  19

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