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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5159 1pzt_A)  ( 1043 1e5k_A)     0.5333   0.6153   3.6602 (   0   18   28)   0     0.5333   0.6153   15  13
( 5159 1pzt_A)  ( 1325 1ezi_A)     0.3333   0.2941   4.5860 (   0    6   10)   0     0.5998   0.5293   15  17
( 5159 1pzt_A)  ( 1590 1fo8_A)     0.3332   0.2174   9.1468 (   0    3   10)   0     0.7174   0.4763   15  23
( 5159 1pzt_A)  ( 1690 1g1l_A)     0.4000   0.2727   3.0076 (   0   11   15)   0     0.7144   0.5298   15  22
( 5159 1pzt_A)  ( 1776 1g97_A)     0.3982   0.3152   5.8846 (   1   11   15)   0     0.5991   0.4734   15  19
( 5159 1pzt_A)  ( 1787 1ga8_A)     0.4000   0.2500   3.6687 (   0    7   15)   0     0.6659   0.4455   15  24
( 5159 1pzt_A)  ( 2122 1h7e_A)     0.3333   0.2381   4.0828 (   0    7   10)   0     0.6663   0.4761   15  21
( 5159 1pzt_A)  ( 2402 1i52_A)     0.3333   0.3125   4.1765 (   0    7   10)   0     0.5999   0.5625   15  16
( 5159 1pzt_A)  ( 3068 1jv1_A)     0.3332   0.1515  10.2145 (   0    7   10)   0     0.6596   0.3029   15  33
( 5159 1pzt_A)  ( 3093 1jyk_A)     0.3333   0.2941   6.0574 (   0    4   10)   0     0.4870   0.4727   15  17
( 5159 1pzt_A)  ( 3466 1kws_A)     0.3333   0.2941   4.6893 (   0    6   10)   0     0.7324   0.6466   15  17
( 5159 1pzt_A)  ( 3651 1ll2_A)     0.3962   0.3146   3.8628 (   1    9   15)   0     0.6658   0.5260   15  19
( 5159 1pzt_A)  ( 4544 1o7q_A)     0.4000   0.3750   4.1527 (   0    8   15)   0     0.7308   0.6857   15  16
( 5159 1pzt_A)  ( 4719 1omz_A)     0.4000   0.3000   3.5719 (   0    5   15)   0     0.8525   0.6466   15  20
( 5159 1pzt_A)  ( 5159 1pzt_A)     1.0000   1.0000   0.0000 (   0   86  105)   0     1.0000   1.0000   15  15
( 5159 1pzt_A)  ( 5322 1qg8_A)     0.4000   0.3333   3.9695 (   0   13   15)   0     0.7705   0.6542   15  18
( 5159 1pzt_A)  ( 5476 1qwj_A)     0.3333   0.3571   4.2756 (   0    6   10)   0     0.6654   0.7125   15  14
( 5159 1pzt_A)  ( 5768 1s4n_A)     0.3995   0.2400  10.4828 (   0    7   15)   0     0.6287   0.4545   15  25
( 5159 1pzt_A)  ( 6228 1vh3_A)     0.3333   0.2632   4.0193 (   0    6   10)   0     0.6614   0.5247   15  19

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