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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5768 1s4n_A)  ( 1043 1e5k_A)     0.4786   0.8892   4.4059 (   3   44   66)   0     0.4786   0.8892   25  13
( 5768 1s4n_A)  ( 1325 1ezi_A)     0.4796   0.7034   5.4697 (   2   44   66)   0     0.4796   0.7034   25  17
( 5768 1s4n_A)  ( 1590 1fo8_A)     0.4601   0.4927   6.1465 (   6   44   66)   0     0.5164   0.5598   25  23
( 5768 1s4n_A)  ( 1690 1g1l_A)     0.4990   0.5535   4.8074 (   7   56   78)   0     0.5449   0.6090   25  22
( 5768 1s4n_A)  ( 1776 1g97_A)     0.5781   0.7156   5.2650 (   8   76  105)   0     0.5781   0.7156   25  19
( 5768 1s4n_A)  ( 1787 1ga8_A)     0.5914   0.6145   3.9673 (   6   73  105)   0     0.5914   0.6145   25  24
( 5768 1s4n_A)  ( 2122 1h7e_A)     0.5635   0.6377   5.7989 (   9   74  105)   0     0.5635   0.6645   25  21
( 5768 1s4n_A)  ( 2402 1i52_A)     0.5181   0.7953   4.6508 (   4   60   78)   0     0.5181   0.7953   25  16
( 5768 1s4n_A)  ( 3068 1jv1_A)     0.5915   0.4524   6.0131 (   6   74  105)   0     0.5915   0.4524   25  33
( 5768 1s4n_A)  ( 3093 1jyk_A)     0.5109   0.7102   4.4718 (   5   50   78)   0     0.5109   0.7102   25  17
( 5768 1s4n_A)  ( 3466 1kws_A)     0.2798   0.4107   4.1857 (   1   13   21)   0     0.4540   0.5819   25  17
( 5768 1s4n_A)  ( 3651 1ll2_A)     0.5165   0.6707   2.9611 (   4   51   78)   0     0.5165   0.6707   25  19
( 5768 1s4n_A)  ( 4544 1o7q_A)     0.5196   0.8090   3.1314 (   2   45   78)   0     0.5306   0.8110   25  16
( 5768 1s4n_A)  ( 4719 1omz_A)     0.2400   0.3000   3.5420 (   0    8   15)   0     0.4225   0.5030   25  20
( 5768 1s4n_A)  ( 5159 1pzt_A)     0.2400   0.3995  10.4828 (   0    7   15)   0     0.4545   0.6287   25  15
( 5768 1s4n_A)  ( 5322 1qg8_A)     0.2000   0.2778   5.8672 (   0    5   10)   0     0.4863   0.5214   25  18
( 5768 1s4n_A)  ( 5476 1qwj_A)     0.4790   0.8405   5.0970 (   3   49   66)   0     0.4796   0.8501   25  14
( 5768 1s4n_A)  ( 5768 1s4n_A)     1.0000   1.0000   0.0000 (   0  234  300)   0     1.0000   1.0000   25  25
( 5768 1s4n_A)  ( 6228 1vh3_A)     0.5780   0.7153   5.8272 (   8   76  105)   0     0.5864   0.7412   25  19

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