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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6228 1vh3_A)  ( 1043 1e5k_A)     0.6286   0.9038   3.2941 (   3   51   66)   0     0.6286   0.9038   19  13
( 6228 1vh3_A)  ( 1325 1ezi_A)     0.6792   0.7561   2.6971 (   4   66   78)   0     0.6792   0.7561   19  17
( 6228 1vh3_A)  ( 1590 1fo8_A)     0.6647   0.5574   4.7466 (   5   58   78)   0     0.6647   0.5574   19  23
( 6228 1vh3_A)  ( 1690 1g1l_A)     0.8389   0.7257   2.9709 (   4   97  120)   0     0.8389   0.7257   19  22
( 6228 1vh3_A)  ( 1776 1g97_A)     0.8288   0.8288   2.9603 (   6  100  120)   0     0.8288   0.8288   19  19
( 6228 1vh3_A)  ( 1787 1ga8_A)     0.7398   0.6080   5.6162 (   8   86  105)   0     0.7398   0.6080   19  24
( 6228 1vh3_A)  ( 2122 1h7e_A)     0.9319   0.8477   1.9227 (   7  130  153)   0     0.9319   0.8477   19  21
( 6228 1vh3_A)  ( 2402 1i52_A)     0.6736   0.7884   2.6945 (   5   68   78)   0     0.6736   0.7884   19  16
( 6228 1vh3_A)  ( 3068 1jv1_A)     0.7575   0.4523   3.7810 (   7   85  105)   0     0.7575   0.4775   19  33
( 6228 1vh3_A)  ( 3093 1jyk_A)     0.6906   0.7490   3.7837 (   7   70   91)   0     0.6906   0.7490   19  17
( 6228 1vh3_A)  ( 3466 1kws_A)     0.6104   0.6706   5.1885 (   4   41   66)   0     0.7176   0.7911   19  17
( 6228 1vh3_A)  ( 3651 1ll2_A)     0.6314   0.6314   4.6104 (   0   47   66)   0     0.6314   0.6314   19  19
( 6228 1vh3_A)  ( 4544 1o7q_A)     0.5787   0.6870   4.8238 (   1   39   55)   0     0.6311   0.7490   19  16
( 6228 1vh3_A)  ( 4719 1omz_A)     0.7053   0.6751   4.5742 (   6   67   91)   0     0.7053   0.6751   19  20
( 6228 1vh3_A)  ( 5159 1pzt_A)     0.2632   0.3333   4.0193 (   0    6   10)   0     0.5247   0.6614   19  15
( 6228 1vh3_A)  ( 5322 1qg8_A)     0.6732   0.7080   4.0433 (   4   54   78)   0     0.6907   0.7120   19  18
( 6228 1vh3_A)  ( 5476 1qwj_A)     0.6391   0.7747   2.2414 (   7   64   78)   0     0.6391   0.8472   19  14
( 6228 1vh3_A)  ( 5768 1s4n_A)     0.7153   0.5780   5.8272 (   8   76  105)   0     0.7412   0.5864   19  25
( 6228 1vh3_A)  ( 6228 1vh3_A)     1.0000   1.0000   0.0000 (   0  148  171)   0     1.0000   1.0000   19  19

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