------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2975 1jmk_C) ( 76 1a8q ) 0.9773 0.7176 4.7515 ( 3 55 78) 0 0.9773 0.7176 13 18 ( 2975 1jmk_C) ( 98 1ac5 ) 0.9222 0.4138 3.8202 ( 1 47 66) 0 0.9222 0.4138 13 29 ( 2975 1jmk_C) ( 211 1auo_A) 0.8460 0.6470 3.1289 ( 0 33 55) 0 0.8460 0.6470 13 17 ( 2975 1jmk_C) ( 303 1b6g ) 0.6630 0.5493 5.2361 ( 8 56 78) 0 0.6630 0.5493 13 21 ( 2975 1jmk_C) ( 453 1brt ) 0.9217 0.6314 4.3796 ( 1 44 66) 0 0.9766 0.6805 13 19 ( 2975 1jmk_C) ( 465 1bu8_A) 0.5319 0.3492 9.3420 ( 1 12 21) 0 0.9223 0.5999 13 20 ( 2975 1jmk_C) ( 530 1c4x_A) 0.9944 0.7211 4.5588 ( 2 56 78) 0 0.9944 0.7211 13 18 ( 2975 1jmk_C) ( 575 1cex ) 0.3846 0.3846 3.3363 ( 0 5 10) 0 0.7666 0.7666 13 13 ( 2975 1jmk_C) ( 652 1cpy ) 0.9224 0.4800 4.0695 ( 0 47 66) 0 0.9224 0.4800 13 25 ( 2975 1jmk_C) ( 691 1cvl ) 0.9127 0.5988 5.3552 ( 2 42 66) 0 0.9127 0.5988 13 20 ( 2975 1jmk_C) ( 849 1din ) 0.8459 0.7332 3.6196 ( 0 33 55) 0 0.9217 0.7993 13 15 ( 2975 1jmk_C) ( 925 1dqz_A) 0.9679 0.6791 6.5675 ( 3 52 78) 0 0.9679 0.6791 13 19 ( 2975 1jmk_C) ( 960 1dx4_A) 0.8459 0.3333 3.4511 ( 0 33 55) 0 0.9135 0.3635 13 33 ( 2975 1jmk_C) ( 1082 1ea5_A) 0.8458 0.3235 3.7209 ( 0 33 55) 0 0.8458 0.3371 13 34 ( 2975 1jmk_C) ( 1165 1ehy_A) 0.9945 0.6834 4.4404 ( 2 56 78) 0 0.9945 0.6834 13 19 ( 2975 1jmk_C) ( 1173 1ei9_A) 0.6153 0.3809 3.7336 ( 0 17 28) 0 0.8452 0.5237 13 21 ( 2975 1jmk_C) ( 1513 1fj2_A) 0.9173 0.7044 6.7759 ( 1 44 66) 0 0.9173 0.7044 13 17 ( 2975 1jmk_C) ( 1740 1g66_A) 0.6922 0.7498 3.9233 ( 0 13 36) 0 0.6922 0.7498 13 12 ( 2975 1jmk_C) ( 1846 1gkl_A) 0.8455 0.6873 4.4137 ( 0 31 55) 0 0.8455 0.6873 13 16 ( 2975 1jmk_C) ( 2535 1imj_A) 0.8459 0.5789 3.4247 ( 0 34 55) 0 0.8459 0.5789 13 19 ( 2975 1jmk_C) ( 2595 1isp_A) 0.7691 0.9088 3.2890 ( 0 26 45) 0 0.7691 0.9088 13 11 ( 2975 1jmk_C) ( 2616 1iup_A) 0.9984 0.6498 4.3553 ( 1 56 78) 0 0.9984 0.6498 13 20 ( 2975 1jmk_C) ( 2632 1ivy_A) 0.9226 0.4000 3.7224 ( 0 46 66) 0 0.9226 0.4000 13 30 ( 2975 1jmk_C) ( 2697 1j1i_A) 0.9227 0.6666 3.4479 ( 0 46 66) 0 0.9227 0.6666 13 18 ( 2975 1jmk_C) ( 2855 1jfr_A) 0.8458 0.6470 3.7277 ( 0 30 55) 0 0.8758 0.6924 13 17 ( 2975 1jmk_C) ( 2934 1jjf_A) 0.8454 0.7329 4.6795 ( 0 29 55) 0 0.8454 0.7329 13 15 ( 2975 1jmk_C) ( 2946 1jkm_A) 0.5818 0.4875 4.9589 ( 5 31 55) 0 0.9127 0.5988 13 20 ( 2975 1jmk_C) ( 2975 1jmk_C) 1.0000 1.0000 0.0000 ( 0 59 78) 0 1.0000 1.0000 13 13 ( 2975 1jmk_C) ( 3062 1ju3_A) 0.9133 0.4796 7.8491 ( 1 46 66) 0 0.9133 0.4796 13 25 ( 2975 1jmk_C) ( 3218 1k8q_A) 0.7039 0.4943 6.6325 ( 7 53 78) 0 0.9227 0.5165 13 25 ( 2975 1jmk_C) ( 3433 1ku0_A) 0.8885 0.4786 5.2187 ( 3 44 66) 0 0.9689 0.5187 13 25 ( 2975 1jmk_C) ( 3558 1l7a_A) 0.8457 0.5500 3.9615 ( 0 33 55) 0 0.8457 0.5500 13 20 ( 2975 1jmk_C) ( 3657 1llf_A) 0.8457 0.3333 4.1706 ( 0 32 55) 0 0.9202 0.3636 13 33 ( 2975 1jmk_C) ( 3679 1lns_A) 0.8940 0.5686 6.1719 ( 3 47 66) 0 0.8940 0.5686 13 21 ( 2975 1jmk_C) ( 3769 1lzl_A) 0.4615 0.3333 3.1643 ( 0 8 15) 0 0.9220 0.6665 13 18 ( 2975 1jmk_C) ( 3814 1m33_A) 0.9938 0.7631 5.0566 ( 2 57 78) 0 0.9938 0.7631 13 17 ( 2975 1jmk_C) ( 3943 1mj5_A) 0.9972 0.6497 5.0920 ( 1 56 78) 0 0.9972 0.6497 13 20 ( 2975 1jmk_C) ( 3984 1mna_A) 0.9991 0.7645 3.6492 ( 1 57 78) 0 0.9991 0.7645 13 17 ( 2975 1jmk_C) ( 4033 1mtz_A) 0.9218 0.6314 4.1909 ( 1 44 66) 0 0.9218 0.6314 13 19 ( 2975 1jmk_C) ( 4065 1mx1_A) 0.8458 0.3333 3.9186 ( 0 34 55) 0 0.9146 0.3636 13 33 ( 2975 1jmk_C) ( 4422 1nx9_A) 0.9200 0.4799 5.9237 ( 0 47 66) 0 0.9952 0.5198 13 25 ( 2975 1jmk_C) ( 4769 1orv_A) 0.4615 0.3529 3.9313 ( 0 8 15) 0 0.9099 0.7024 13 17 ( 2975 1jmk_C) ( 5028 1pja_A) 0.7692 0.5555 2.9221 ( 0 24 45) 0 0.7692 0.5555 13 18 ( 2975 1jmk_C) ( 5168 1q0r_A) 0.9157 0.6652 4.4189 ( 2 45 66) 0 0.9157 0.6652 13 18 ( 2975 1jmk_C) ( 5301 1qe3_A) 0.8458 0.3548 3.9051 ( 0 33 55) 0 0.8458 0.3548 13 31 ( 2975 1jmk_C) ( 5315 1qfm_A) 0.8443 0.6466 4.1981 ( 1 30 55) 0 0.8793 0.6935 13 17 ( 2975 1jmk_C) ( 5352 1qj4_A) 0.8421 0.6103 6.6556 ( 1 34 55) 0 0.8421 0.6103 13 18 ( 2975 1jmk_C) ( 5380 1qlw_A) 0.8457 0.5000 4.1460 ( 0 30 55) 0 0.9125 0.5447 13 22 ( 2975 1jmk_C) ( 5400 1qo7_A) 0.9222 0.5454 3.7968 ( 1 46 66) 0 0.9222 0.5454 13 22 ( 2975 1jmk_C) ( 5450 1qtr_A) 0.9227 0.5714 3.3763 ( 0 43 66) 0 0.9227 0.6021 13 21 ( 2975 1jmk_C) ( 5498 1qz3_A) 0.9190 0.6310 6.1089 ( 1 42 66) 0 0.9190 0.6566 13 19 ( 2975 1jmk_C) ( 5522 1r1d_A) 0.8430 0.6864 6.2041 ( 1 35 55) 0 0.9924 0.8098 13 16 ( 2975 1jmk_C) ( 5894 1tca ) 0.9219 0.5454 4.6463 ( 0 45 66) 0 0.9219 0.5644 13 22 ( 2975 1jmk_C) ( 5912 1tht_A) 0.9106 0.5703 5.5852 ( 2 40 66) 0 0.9106 0.5703 13 21 ( 2975 1jmk_C) ( 5913 1tib ) 0.3846 0.2941 4.5230 ( 0 7 10) 0 0.3846 0.3201 13 17 ( 2975 1jmk_C) ( 6006 1ufo_A) 0.8824 0.7347 6.9413 ( 3 43 66) 0 0.8824 0.7347 13 16 ( 2975 1jmk_C) ( 6129 1uwc_A) 0.3846 0.2778 3.5679 ( 0 5 10) 0 0.4613 0.3911 13 18 ( 2975 1jmk_C) ( 6279 1vj5_A) 0.9214 0.5998 4.6476 ( 1 44 66) 0 0.9214 0.5998 13 20 ( 2975 1jmk_C) ( 6404 2bce ) 0.8458 0.3143 3.7507 ( 0 33 55) 0 0.8458 0.3143 13 35 ( 2975 1jmk_C) ( 6599 3tgl ) 0.3846 0.2632 4.8062 ( 0 7 10) 0 0.4022 0.3042 13 19 -------------------------------------------------------------------------------------------------------------------------