------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3558 1l7a_A) ( 76 1a8q ) 0.7468 0.8280 4.8677 ( 3 65 105) 0 0.7468 0.8280 20 18 ( 3558 1l7a_A) ( 98 1ac5 ) 0.7496 0.5172 4.4025 ( 1 62 105) 0 0.7496 0.5172 20 29 ( 3558 1l7a_A) ( 211 1auo_A) 0.6000 0.7058 3.3249 ( 0 39 66) 0 0.6376 0.7380 20 17 ( 3558 1l7a_A) ( 303 1b6g ) 0.7391 0.7057 5.8104 ( 4 62 105) 0 0.7391 0.7057 20 21 ( 3558 1l7a_A) ( 453 1brt ) 0.7332 0.7680 4.6554 ( 5 68 105) 0 0.7332 0.7680 20 19 ( 3558 1l7a_A) ( 465 1bu8_A) 0.4000 0.4000 2.9206 ( 0 14 28) 0 0.6491 0.6491 20 20 ( 3558 1l7a_A) ( 530 1c4x_A) 0.6832 0.7502 3.4721 ( 5 62 91) 0 0.6832 0.7502 20 18 ( 3558 1l7a_A) ( 575 1cex ) 0.5000 0.7690 3.9598 ( 0 21 45) 0 0.5000 0.7690 20 13 ( 3558 1l7a_A) ( 652 1cpy ) 0.7396 0.5965 4.7751 ( 4 62 105) 0 0.7396 0.5965 20 25 ( 3558 1l7a_A) ( 691 1cvl ) 0.5886 0.5886 4.7106 ( 3 34 66) 0 0.5917 0.5917 20 20 ( 3558 1l7a_A) ( 849 1din ) 0.6499 0.8661 2.8914 ( 1 42 78) 0 0.6882 0.8875 20 15 ( 3558 1l7a_A) ( 925 1dqz_A) 0.7885 0.8274 5.8632 ( 4 67 120) 0 0.7885 0.8274 20 19 ( 3558 1l7a_A) ( 960 1dx4_A) 0.7494 0.4545 4.9548 ( 1 70 105) 0 0.7624 0.5228 20 33 ( 3558 1l7a_A) ( 1082 1ea5_A) 0.7361 0.4652 5.3281 ( 8 81 120) 0 0.7925 0.5088 20 34 ( 3558 1l7a_A) ( 1165 1ehy_A) 0.6959 0.7316 3.9696 ( 3 54 91) 0 0.6959 0.7316 20 19 ( 3558 1l7a_A) ( 1173 1ei9_A) 0.5977 0.5696 3.3597 ( 2 34 66) 0 0.6485 0.6210 20 21 ( 3558 1l7a_A) ( 1513 1fj2_A) 0.6498 0.7643 3.7531 ( 1 43 78) 0 0.6498 0.7643 20 17 ( 3558 1l7a_A) ( 1740 1g66_A) 0.4990 0.8212 4.3081 ( 1 17 45) 0 0.4990 0.8212 20 12 ( 3558 1l7a_A) ( 1846 1gkl_A) 0.6997 0.8740 4.5297 ( 1 53 91) 0 0.6997 0.8740 20 16 ( 3558 1l7a_A) ( 2535 1imj_A) 0.6997 0.7364 4.7996 ( 0 51 91) 0 0.6997 0.7364 20 19 ( 3558 1l7a_A) ( 2595 1isp_A) 0.5000 0.9089 3.0237 ( 0 26 45) 0 0.5000 0.9089 20 11 ( 3558 1l7a_A) ( 2616 1iup_A) 0.7910 0.7910 4.4436 ( 4 70 120) 0 0.7910 0.7910 20 20 ( 3558 1l7a_A) ( 2632 1ivy_A) 0.6998 0.4666 3.9951 ( 0 53 91) 0 0.6998 0.4666 20 30 ( 3558 1l7a_A) ( 2697 1j1i_A) 0.6999 0.7776 3.1917 ( 1 55 91) 0 0.7136 0.7776 20 18 ( 3558 1l7a_A) ( 2855 1jfr_A) 0.6499 0.7646 3.2817 ( 0 47 78) 0 0.6499 0.7646 20 17 ( 3558 1l7a_A) ( 2934 1jjf_A) 0.6499 0.8661 4.1857 ( 0 46 78) 0 0.6499 0.8661 20 15 ( 3558 1l7a_A) ( 2946 1jkm_A) 0.7498 0.7498 4.0248 ( 0 62 105) 0 0.7498 0.7498 20 20 ( 3558 1l7a_A) ( 2975 1jmk_C) 0.5500 0.8457 3.9615 ( 0 33 55) 0 0.5500 0.8457 20 13 ( 3558 1l7a_A) ( 3062 1ju3_A) 0.7003 0.6007 5.2016 ( 8 70 120) 0 0.7372 0.6007 20 25 ( 3558 1l7a_A) ( 3218 1k8q_A) 0.7471 0.5990 5.0615 ( 3 67 105) 0 0.7653 0.6279 20 25 ( 3558 1l7a_A) ( 3433 1ku0_A) 0.3480 0.2793 6.9053 ( 1 9 21) 0 0.6493 0.5302 20 25 ( 3558 1l7a_A) ( 3558 1l7a_A) 1.0000 1.0000 0.0000 ( 0 139 190) 0 1.0000 1.0000 20 20 ( 3558 1l7a_A) ( 3657 1llf_A) 0.4500 0.2727 3.9765 ( 0 24 36) 0 0.8143 0.5285 20 33 ( 3558 1l7a_A) ( 3679 1lns_A) 0.7993 0.7614 3.4162 ( 2 71 120) 0 0.7993 0.7614 20 21 ( 3558 1l7a_A) ( 3769 1lzl_A) 0.7429 0.8214 3.7899 ( 4 68 105) 0 0.7429 0.8214 20 18 ( 3558 1l7a_A) ( 3814 1m33_A) 0.6443 0.7521 4.0706 ( 3 45 78) 0 0.6443 0.7521 20 17 ( 3558 1l7a_A) ( 3943 1mj5_A) 0.6988 0.6988 4.0597 ( 2 51 91) 0 0.6988 0.6988 20 20 ( 3558 1l7a_A) ( 3984 1mna_A) 0.5988 0.7032 4.4745 ( 2 41 66) 0 0.6037 0.7032 20 17 ( 3558 1l7a_A) ( 4033 1mtz_A) 0.7669 0.8002 5.8627 ( 6 74 120) 0 0.7669 0.8002 20 19 ( 3558 1l7a_A) ( 4065 1mx1_A) 0.4500 0.2727 3.5039 ( 0 24 36) 0 0.7484 0.5042 20 33 ( 3558 1l7a_A) ( 4422 1nx9_A) 0.7677 0.6288 4.3438 ( 6 74 120) 0 0.7677 0.6288 20 25 ( 3558 1l7a_A) ( 4769 1orv_A) 0.7819 0.9022 3.4293 ( 5 72 120) 0 0.7819 0.9022 20 17 ( 3558 1l7a_A) ( 5028 1pja_A) 0.6485 0.7198 3.9604 ( 2 43 78) 0 0.6485 0.7198 20 18 ( 3558 1l7a_A) ( 5168 1q0r_A) 0.7498 0.8330 3.6653 ( 1 64 105) 0 0.7498 0.8330 20 18 ( 3558 1l7a_A) ( 5301 1qe3_A) 0.7253 0.5059 4.7220 ( 8 77 120) 1 0.7870 0.5402 20 31 ( 3558 1l7a_A) ( 5315 1qfm_A) 0.7694 0.8774 3.7743 ( 6 75 120) 0 0.7694 0.8814 20 17 ( 3558 1l7a_A) ( 5352 1qj4_A) 0.6468 0.7168 4.4351 ( 2 35 78) 0 0.6491 0.7207 20 18 ( 3558 1l7a_A) ( 5380 1qlw_A) 0.6951 0.6333 4.6566 ( 3 52 91) 0 0.6951 0.6333 20 22 ( 3558 1l7a_A) ( 5400 1qo7_A) 0.6499 0.5908 3.5197 ( 1 49 78) 0 0.6923 0.6315 20 22 ( 3558 1l7a_A) ( 5450 1qtr_A) 0.7693 0.7375 3.8679 ( 6 75 120) 0 0.7693 0.7375 20 21 ( 3558 1l7a_A) ( 5498 1qz3_A) 0.7494 0.7886 3.7105 ( 2 67 105) 0 0.7494 0.7886 20 19 ( 3558 1l7a_A) ( 5522 1r1d_A) 0.6497 0.8117 4.3646 ( 1 40 78) 0 0.6497 0.8117 20 16 ( 3558 1l7a_A) ( 5894 1tca ) 0.4000 0.3636 2.8163 ( 0 13 28) 0 0.5809 0.5445 20 22 ( 3558 1l7a_A) ( 5912 1tht_A) 0.7786 0.7449 4.0916 ( 5 69 120) 0 0.7786 0.7449 20 21 ( 3558 1l7a_A) ( 5913 1tib ) 0.3000 0.3529 4.4808 ( 0 8 15) 0 0.3961 0.4621 20 17 ( 3558 1l7a_A) ( 6006 1ufo_A) 0.7265 0.8726 4.6371 ( 5 62 105) 0 0.7265 0.8726 20 16 ( 3558 1l7a_A) ( 6129 1uwc_A) 0.3000 0.3333 4.1368 ( 0 8 15) 0 0.4461 0.4586 20 18 ( 3558 1l7a_A) ( 6279 1vj5_A) 0.7434 0.7434 4.4990 ( 4 70 105) 0 0.7434 0.7434 20 20 ( 3558 1l7a_A) ( 6404 2bce ) 0.6998 0.4000 4.2768 ( 0 62 91) 0 0.7994 0.4996 20 35 ( 3558 1l7a_A) ( 6599 3tgl ) 0.3487 0.3667 6.0229 ( 1 10 21) 0 0.4239 0.4290 20 19 -------------------------------------------------------------------------------------------------------------------------