------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2219 1hk8_A) ( 2036 1h16_A) 0.7264 0.5555 4.3939 ( 23 236 300) 0 0.7264 0.5555 32 44 ( 2219 1hk8_A) ( 2219 1hk8_A) 1.0000 1.0000 0.0000 ( 0 435 496) 0 1.0000 1.0000 32 32 ( 2219 1hk8_A) ( 3514 1l1l_A) 0.3210 0.2737 7.5147 ( 24 82 105) 1 0.5873 0.4770 32 48 ( 2219 1hk8_A) ( 5676 1rlr ) 0.6173 0.5825 5.0563 ( 12 159 190) 0 0.6173 0.5825 32 34 -------------------------------------------------------------------------------------------------------------------------