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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3514 1l1l_A)  ( 2036 1h16_A)     0.3061   0.3088   6.4260 (  75  237  300)   1     0.3695   0.3780   48  44
( 3514 1l1l_A)  ( 2219 1hk8_A)     0.3418   0.3586   5.6657 (  63  229  276)   1     0.4776   0.5890   48  32
( 3514 1l1l_A)  ( 3514 1l1l_A)     1.0000   1.0000   0.0000 (   0  965 1128)   0     1.0000   1.0000   48  48
( 3514 1l1l_A)  ( 5676 1rlr  )     0.4791   0.6760   3.4081 (   7  210  253)   0     0.4944   0.6769   48  34

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