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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5676 1rlr  )  ( 2036 1h16_A)     0.5507   0.4431   5.4044 (  19  151  190)   1     0.5507   0.4431   34  44
( 5676 1rlr  )  ( 2219 1hk8_A)     0.5825   0.6173   5.0563 (  12  159  190)   0     0.5825   0.6173   34  32
( 5676 1rlr  )  ( 3514 1l1l_A)     0.6760   0.4791   3.4081 (   7  210  253)   0     0.6769   0.4944   34  48
( 5676 1rlr  )  ( 5676 1rlr  )     1.0000   1.0000   0.0000 (   0  493  561)   0     1.0000   1.0000   34  34

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