------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1930 1gs5_A) ( 998 1e19_A) 0.8310 0.7361 4.1904 ( 7 100 153) 0 0.8310 0.7361 21 24 ( 1930 1gs5_A) ( 1930 1gs5_A) 1.0000 1.0000 0.0000 ( 0 158 210) 0 1.0000 1.0000 21 21 -------------------------------------------------------------------------------------------------------------------------