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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  945 1duv_G)  (  307 1b74_A)     0.3846   0.6249   4.2461 (   0    4   10)   0     0.5384   0.8743   13   8
(  945 1duv_G)  (  308 1b74_A)     0.3846   0.4167   3.3115 (   0    7   10)   0     0.5789   0.6150   13  12
(  945 1duv_G)  (  944 1duv_G)     0.5604   0.6768   4.2339 (   2   15   28)   0     0.6111   0.8633   13   9
(  945 1duv_G)  (  945 1duv_G)     1.0000   1.0000   0.0000 (   0   60   78)   0     1.0000   1.0000   13  13
(  945 1duv_G)  ( 2852 1jfl_A)     0.4564   0.6371   4.9071 (   1   10   15)   0     0.4575   0.6371   13   9
(  945 1duv_G)  ( 2853 1jfl_A)     0.3296   0.3769   4.9783 (   1    4   10)   0     0.4495   0.6040   13   9
(  945 1duv_G)  ( 3039 1js1_X)     0.4615   0.6000   3.3401 (   0    5   15)   0     0.5709   0.7000   13  10
(  945 1duv_G)  ( 3040 1js1_X)     0.7960   0.8977   2.1379 (   3   35   55)   0     0.7960   0.9069   13  11
(  945 1duv_G)  ( 3968 1ml4_A)     0.3077   0.4000   3.4065 (   0    1    6)   0     0.6153   0.7998   13  10
(  945 1duv_G)  ( 3969 1ml4_A)     0.9159   0.9894   2.7298 (   2   44   66)   0     0.9159   0.9894   13  12
(  945 1duv_G)  ( 4781 1oth_A)     0.9231   0.9231   1.4360 (   0   43   66)   0     0.9231   0.9231   13  13

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