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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2684 1j0a_A)  ( 1046 1e5x_A)     0.8343   0.6567   3.0849 (  11  147  190)   0     0.8343   0.6726   23  30
( 2684 1j0a_A)  ( 1370 1f2d_A)     0.8335   0.8335   2.8177 (  11  146  190)   0     0.8335   0.8335   23  23
( 2684 1j0a_A)  ( 2684 1j0a_A)     1.0000   1.0000   0.0000 (   0  209  253)   0     1.0000   1.0000   23  23
( 2684 1j0a_A)  ( 3340 1kl7_A)     0.7591   0.6131   4.0215 (  13  135  171)   0     0.7591   0.6131   23  30
( 2684 1j0a_A)  ( 4495 1o58_A)     0.3913   0.4736   2.6020 (   1   28   36)   0     0.7273   0.8652   23  19
( 2684 1j0a_A)  ( 5138 1pwh_A)     0.8421   0.8421   2.6961 (  10  143  190)   0     0.8421   0.8421   23  23
( 2684 1j0a_A)  ( 5404 1qop_B)     0.8655   0.7128   3.2827 (   6  143  190)   0     0.8655   0.7236   23  28
( 2684 1j0a_A)  ( 5895 1tdj  )     0.7749   0.8015   3.0138 (  12  135  171)   0     0.7749   0.8015   23  22
( 2684 1j0a_A)  ( 6189 1v7c_A)     0.7487   0.7487   2.6269 (  10  118  153)   0     0.7487   0.7487   23  23

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