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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3340 1kl7_A)  ( 1046 1e5x_A)     0.6578   0.6578   4.0406 (  18  173  210)   0     0.6578   0.6578   30  30
( 3340 1kl7_A)  ( 1370 1f2d_A)     0.3000   0.3913   3.7461 (   0   27   36)   0     0.5376   0.6495   30  23
( 3340 1kl7_A)  ( 2684 1j0a_A)     0.6131   0.7591   4.0215 (  13  135  171)   0     0.6131   0.7591   30  23
( 3340 1kl7_A)  ( 3340 1kl7_A)     1.0000   1.0000   0.0000 (   0  374  435)   0     1.0000   1.0000   30  30
( 3340 1kl7_A)  ( 4495 1o58_A)     0.5090   0.6202   4.3546 (  16  106  136)   0     0.5090   0.6811   30  19
( 3340 1kl7_A)  ( 5138 1pwh_A)     0.5931   0.7065   4.3315 (  16  137  171)   0     0.5931   0.7286   30  23
( 3340 1kl7_A)  ( 5404 1qop_B)     0.6234   0.6647   3.9919 (  11  138  171)   0     0.6234   0.6647   30  28
( 3340 1kl7_A)  ( 5895 1tdj  )     0.5155   0.5660   3.7861 (  23  137  171)   0     0.5155   0.5660   30  22
( 3340 1kl7_A)  ( 6189 1v7c_A)     0.5786   0.6498   4.3102 (  22  157  190)   0     0.5786   0.6699   30  23

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