------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5895 1tdj ) ( 1046 1e5x_A) 0.9186 0.7133 4.7023 ( 15 189 231) 0 0.9186 0.7133 22 30 ( 5895 1tdj ) ( 1370 1f2d_A) 0.7375 0.7155 3.9147 ( 12 116 153) 0 0.7375 0.7155 22 23 ( 5895 1tdj ) ( 2684 1j0a_A) 0.8015 0.7749 3.0138 ( 12 135 171) 0 0.8015 0.7749 22 23 ( 5895 1tdj ) ( 3340 1kl7_A) 0.5660 0.5155 3.7861 ( 23 137 171) 0 0.5660 0.5155 22 30 ( 5895 1tdj ) ( 4495 1o58_A) 0.7086 0.7785 3.3348 ( 11 106 136) 0 0.7391 0.8300 22 19 ( 5895 1tdj ) ( 5138 1pwh_A) 0.9384 0.9001 3.5500 ( 9 168 210) 0 0.9384 0.9001 22 23 ( 5895 1tdj ) ( 5404 1qop_B) 0.8896 0.7082 3.8419 ( 9 150 190) 0 0.8896 0.7082 22 28 ( 5895 1tdj ) ( 5895 1tdj ) 1.0000 1.0000 0.0000 ( 0 201 231) 0 1.0000 1.0000 22 22 ( 5895 1tdj ) ( 6189 1v7c_A) 0.8557 0.8258 3.5545 ( 12 151 190) 0 0.8557 0.8258 22 23 -------------------------------------------------------------------------------------------------------------------------