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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5895 1tdj  )  ( 1046 1e5x_A)     0.9186   0.7133   4.7023 (  15  189  231)   0     0.9186   0.7133   22  30
( 5895 1tdj  )  ( 1370 1f2d_A)     0.7375   0.7155   3.9147 (  12  116  153)   0     0.7375   0.7155   22  23
( 5895 1tdj  )  ( 2684 1j0a_A)     0.8015   0.7749   3.0138 (  12  135  171)   0     0.8015   0.7749   22  23
( 5895 1tdj  )  ( 3340 1kl7_A)     0.5660   0.5155   3.7861 (  23  137  171)   0     0.5660   0.5155   22  30
( 5895 1tdj  )  ( 4495 1o58_A)     0.7086   0.7785   3.3348 (  11  106  136)   0     0.7391   0.8300   22  19
( 5895 1tdj  )  ( 5138 1pwh_A)     0.9384   0.9001   3.5500 (   9  168  210)   0     0.9384   0.9001   22  23
( 5895 1tdj  )  ( 5404 1qop_B)     0.8896   0.7082   3.8419 (   9  150  190)   0     0.8896   0.7082   22  28
( 5895 1tdj  )  ( 5895 1tdj  )     1.0000   1.0000   0.0000 (   0  201  231)   0     1.0000   1.0000   22  22
( 5895 1tdj  )  ( 6189 1v7c_A)     0.8557   0.8258   3.5545 (  12  151  190)   0     0.8557   0.8258   22  23

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