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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  106 1ad3_A)  (  106 1ad3_A)     1.0000   1.0000   0.0000 (   0  362  435)   0     1.0000   1.0000   30  30
(  106 1ad3_A)  ( 1267 1euh_A)     0.8905   0.8122   2.8546 (  14  277  351)   0     0.8905   0.8122   30  33
(  106 1ad3_A)  ( 1320 1ez0_A)     0.8992   0.8046   3.7749 (  20  296  378)   0     0.8992   0.8046   30  34
(  106 1ad3_A)  ( 3197 1k75_A)     0.4561   0.4537   5.2286 (  36  171  231)   0     0.5660   0.5561   30  31
(  106 1ad3_A)  ( 3474 1ky8_A)     0.9412   0.7550   3.8246 (  19  319  406)   0     0.9412   0.7550   30  38
(  106 1ad3_A)  ( 4460 1o04_A)     0.9459   0.8416   2.9474 (  18  318  406)   0     0.9459   0.8416   30  34
(  106 1ad3_A)  ( 4476 1o20_A)     0.7551   0.8053   4.8460 (  12  186  253)   0     0.7551   0.8053   30  28
(  106 1ad3_A)  ( 6149 1uzb_A)     0.9245   0.8188   3.1484 (  14  297  378)   0     0.9245   0.8188   30  34

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