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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4460 1o04_A)  (  106 1ad3_A)     0.8416   0.9459   2.9474 (  18  318  406)   0     0.8416   0.9459   34  30
( 4460 1o04_A)  ( 1267 1euh_A)     0.9325   0.9596   2.1931 (  18  385  496)   0     0.9325   0.9596   34  33
( 4460 1o04_A)  ( 1320 1ez0_A)     0.8986   0.8986   3.0213 (  20  370  465)   0     0.8986   0.8986   34  34
( 4460 1o04_A)  ( 3197 1k75_A)     0.5772   0.6173   4.5034 (  18  149  210)   0     0.5772   0.6173   34  31
( 4460 1o04_A)  ( 3474 1ky8_A)     0.9380   0.8403   2.9608 (  14  392  496)   0     0.9380   0.8403   34  38
( 4460 1o04_A)  ( 4460 1o04_A)     1.0000   1.0000   0.0000 (   0  457  561)   0     1.0000   1.0000   34  34
( 4460 1o04_A)  ( 4476 1o20_A)     0.7066   0.8245   4.8045 (  20  229  300)   0     0.7066   0.8245   34  28
( 4460 1o04_A)  ( 6149 1uzb_A)     0.9302   0.9302   1.7757 (  19  382  496)   0     0.9302   0.9302   34  34

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