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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2510 1iir_A)  (   70 1a8i  )     0.3797   0.3264   6.4250 (  43  165  231)   0     0.6698   0.3817   26  56
( 2510 1iir_A)  ( 1348 1f0k_A)     0.6909   0.6501   4.3778 (  12  124  171)   0     0.6909   0.6675   26  28
( 2510 1iir_A)  ( 2510 1iir_A)     1.0000   1.0000   0.0000 (   0  263  325)   0     1.0000   1.0000   26  26
( 2510 1iir_A)  ( 2896 1jix_A)     0.3461   0.3600   4.3233 (   0   18   36)   0     0.5498   0.5633   26  25
( 2510 1iir_A)  ( 5101 1psw_A)     0.5657   0.5753   5.7962 (  16  105  153)   0     0.5752   0.5835   26  25
( 2510 1iir_A)  ( 6080 1uqt_A)     0.6083   0.5487   4.7222 (  29  188  253)   0     0.6829   0.5887   26  35
( 2510 1iir_A)  ( 6170 1v4v_A)     0.3846   0.3571   4.5520 (   0   20   45)   0     0.6620   0.6422   26  28

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