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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2896 1jix_A)  (   70 1a8i  )     0.6588   0.3531   6.6698 (  17  131  190)   1     0.6927   0.4061   25  56
( 2896 1jix_A)  ( 1348 1f0k_A)     0.3598   0.3213   3.9580 (   1   16   36)   0     0.4760   0.4263   25  28
( 2896 1jix_A)  ( 2510 1iir_A)     0.3600   0.3461   4.3233 (   0   18   36)   0     0.5633   0.5498   25  26
( 2896 1jix_A)  ( 2896 1jix_A)     1.0000   1.0000   0.0000 (   0  243  300)   0     1.0000   1.0000   25  25
( 2896 1jix_A)  ( 5101 1psw_A)     0.4330   0.4330   5.7988 (  16   75  105)   0     0.6184   0.6184   25  25
( 2896 1jix_A)  ( 6080 1uqt_A)     0.3650   0.2949   4.3964 (   7   30   55)   0     0.7627   0.6004   25  35
( 2896 1jix_A)  ( 6170 1v4v_A)     0.5773   0.5474   5.2044 (  15   99  153)   0     0.6688   0.6211   25  28

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