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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3369 1knx_A)  ( 3299 1khb_A)     0.8545   0.5190   4.8220 (   3   54   78)   0     0.8545   0.5190   15  25
( 3369 1knx_A)  ( 3369 1knx_A)     1.0000   1.0000   0.0000 (   0   89  105)   0     1.0000   1.0000   15  15
( 3369 1knx_A)  ( 3377 1ko7_A)     0.9953   0.8798   3.3317 (   3   83  105)   0     0.9953   0.8798   15  17
( 3369 1knx_A)  ( 4771 1os1_A)     0.7437   0.5140   4.2033 (   4   42   66)   0     0.7437   0.5140   15  23

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