------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2057 1h3d_A) ( 82 1a99_A) 0.3708 0.2946 6.1730 ( 3 14 28) 0 0.5119 0.4058 19 26 ( 2057 1h3d_A) ( 146 1al3 ) 0.4733 0.4733 5.7325 ( 1 22 36) 0 0.6382 0.6382 19 19 ( 2057 1h3d_A) ( 157 1amf ) 0.5257 0.4995 6.3306 ( 1 23 45) 0 0.5257 0.5037 19 20 ( 2057 1h3d_A) ( 201 1atg ) 0.5221 0.5500 5.9875 ( 2 25 45) 0 0.6092 0.6202 19 18 ( 2057 1h3d_A) ( 552 1cb6_A) 0.4513 0.4151 5.4085 ( 14 65 105) 0 0.5513 0.4151 19 28 ( 2057 1h3d_A) ( 905 1dpe ) 0.3195 0.2838 7.0883 ( 12 39 66) 0 0.4518 0.2884 19 34 ( 2057 1h3d_A) ( 1204 1elj_A) 0.4864 0.3751 5.6455 ( 4 27 45) 0 0.5442 0.4150 19 26 ( 2057 1h3d_A) ( 1264 1eu8_A) 0.5256 0.3333 7.2951 ( 1 24 45) 0 0.5403 0.4465 19 30 ( 2057 1h3d_A) ( 1967 1gv8_A) 0.4210 0.5714 4.1102 ( 0 17 28) 0 0.4308 0.5714 19 14 ( 2057 1h3d_A) ( 2057 1h3d_A) 1.0000 1.0000 0.0000 ( 0 139 171) 0 1.0000 1.0000 19 19 ( 2057 1h3d_A) ( 2412 1i6a_A) 0.5144 0.5431 6.3793 ( 9 51 78) 0 0.5245 0.5945 19 15 ( 2057 1h3d_A) ( 2503 1ii5_A) 0.6402 0.6286 4.7913 ( 11 78 120) 0 0.6402 0.6286 19 20 ( 2057 1h3d_A) ( 2646 1ixc_A) 0.5500 0.5997 6.0288 ( 5 42 55) 0 0.5500 0.5997 19 17 ( 2057 1h3d_A) ( 2648 1ixh ) 0.5117 0.4290 6.4953 ( 3 27 45) 0 0.6721 0.5605 19 23 ( 2057 1h3d_A) ( 2700 1j1n_A) 0.2627 0.1470 7.0942 ( 1 9 10) 0 0.5024 0.3411 19 34 ( 2057 1h3d_A) ( 2841 1jet_A) 0.5040 0.2928 6.5946 ( 3 24 45) 0 0.5040 0.3605 19 34 ( 2057 1h3d_A) ( 3723 1lst ) 0.5145 0.5229 4.6445 ( 9 51 78) 0 0.6081 0.6366 19 18 ( 2057 1h3d_A) ( 4009 1mqi_A) 0.4295 0.4236 4.6072 ( 14 62 91) 0 0.5231 0.4743 19 21 ( 2057 1h3d_A) ( 4254 1nh8_A) 0.9908 0.9429 2.6834 ( 6 137 171) 0 0.9908 0.9429 19 20 ( 2057 1h3d_A) ( 4320 1nnf_A) 0.3687 0.3575 7.2418 ( 7 27 55) 0 0.5013 0.4570 19 22 ( 2057 1h3d_A) ( 4506 1o63_A) 0.8933 0.8489 2.8630 ( 3 98 136) 0 0.8933 0.8489 19 20 ( 2057 1h3d_A) ( 4939 1p99_A) 0.5216 0.5161 4.6056 ( 12 66 105) 0 0.6778 0.6450 19 20 ( 2057 1h3d_A) ( 4957 1pb7_A) 0.3092 0.3067 5.9345 ( 16 50 78) 0 0.5853 0.5214 19 22 ( 2057 1h3d_A) ( 4982 1pda ) 0.4257 0.4332 4.8236 ( 13 57 91) 0 0.7221 0.8887 19 15 ( 2057 1h3d_A) ( 5070 1pot ) 0.4210 0.3636 5.0496 ( 0 14 28) 0 0.5118 0.4474 19 22 ( 2057 1h3d_A) ( 5192 1q35_A) 0.5218 0.4330 7.2895 ( 2 25 45) 0 0.5218 0.4330 19 23 ( 2057 1h3d_A) ( 5599 1r9l_A) 0.7348 0.6535 5.0179 ( 7 73 105) 0 0.7348 0.6535 19 22 ( 2057 1h3d_A) ( 5730 1ryo_A) 0.4837 0.4244 4.5931 ( 8 43 66) 0 0.5773 0.5007 19 25 ( 2057 1h3d_A) ( 5788 1sbp ) 0.4279 0.3946 5.8462 ( 13 58 78) 0 0.6354 0.5112 19 26 ( 2057 1h3d_A) ( 6029 1uiu_A) 0.4426 0.3697 5.7832 ( 12 55 91) 0 0.5091 0.3697 19 33 ( 2057 1h3d_A) ( 6082 1uqw_A) 0.3732 0.2385 8.2996 ( 4 19 28) 0 0.4479 0.2959 19 33 ( 2057 1h3d_A) ( 6089 1urs_A) 0.4196 0.3323 6.8805 ( 3 16 36) 0 0.6643 0.5204 19 26 ( 2057 1h3d_A) ( 6092 1us5_A) 0.5422 0.5171 6.0486 ( 16 90 136) 0 0.5422 0.5171 19 24 ( 2057 1h3d_A) ( 6328 1wdn_A) 0.5140 0.5073 4.9149 ( 10 55 91) 0 0.5242 0.5073 19 20 ( 2057 1h3d_A) ( 6581 3mbp ) 0.4702 0.3327 5.7912 ( 2 23 36) 0 0.5069 0.4081 19 27 ( 2057 1h3d_A) ( 6600 3thi_A) 0.5024 0.4027 6.5005 ( 5 31 55) 0 0.6361 0.5312 19 26 -------------------------------------------------------------------------------------------------------------------------