------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [2412, 82]: Comparing 1i6a_A and 1a99_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 32 (21 H + 11 S) secondary structure elements in 1a99_A, of which 26 satisfy the size requirements. 1.54879 [ 2.60978] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 11) (13 . 20) (14 . 21) (19 . 24) (20 . 25)) 4.861 {2/22:45} B:0 1.58051 [ 2.25454] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 11) (10 . 13) (13 . 20) (14 . 21) (17 . 23) (19 . 24) (20 . 25)) 4.753 {6/43:66} B:0 1.76242 [ 2.90872] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 11) (13 . 22) (19 . 24) (20 . 25)) 5.718 {2/17:36} B:0 1.90469 [ 2.28767] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 11) (10 . 13) (11 . 15) (13 . 20) (14 . 21) (17 . 23) (19 . 24) (20 . 25)) 4.704 {9/49:78} B:0 3.06119 [ 4.00412] ((2 . 6) (7 . 11) (10 . 12) (11 . 15) (13 . 18) (14 . 21) (19 . 23)) 8.764 {4/14:21} B:0 SIMILARITY (1/min{score1}): 0.6457 [and 1/min{score2}: 0.4435] [2412, 146]: Comparing 1i6a_A and 1al3, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 20 (10 H + 10 S) secondary structure elements in 1al3, of which 19 satisfy the size requirements. 1.39785 [ 1.66371] ((1 . 1) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 7) (11 . 12) (13 . 13) (14 . 14) (17 . 16) (19 . 17) (20 . 18)) 5.151 {4/37:66} B:0 1.53086 [ 1.65854] ((1 . 1) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 7) (10 . 9) (11 . 10) (12 . 12) (13 . 13) (14 . 14) (17 . 16) (19 . 17) (20 . 18)) 4.988 {8/56:91} B:0 3.75025 [ 4.75012] ((4 . 3) (5 . 4) (7 . 6) (13 . 11)) 7.683 {0/1:6} B:0 3.75027 [ 4.75013] ((4 . 9) (5 . 10) (6 . 11) (7 . 12)) 7.786 {0/2:6} B:0 3.75036 [ 4.75018] ((12 . 1) (13 . 3) (14 . 4) (19 . 6)) 8.382 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7154 [and 1/min{score2}: 0.6029] [2412, 157]: Comparing 1i6a_A and 1amf, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1amf, of which 20 satisfy the size requirements. 1.37886 [ 1.82468] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (13 . 12) (17 . 16) (19 . 20) (20 . 21)) 6.167 {2/33:55} B:0 1.66970 [ 2.22351] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (19 . 20) (20 . 21)) 4.244 {1/21:36} B:0 1.71966 [ 2.00671] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (13 . 12) (17 . 18) (19 . 20) (20 . 21)) 5.801 {5/33:55} B:0 1.87106 [ 1.97136] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (11 . 11) (12 . 14) (13 . 15) (14 . 16) (17 . 18) (19 . 20) (20 . 21)) 5.055 {10/55:91} B:0 2.01343 [ 2.12168] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (11 . 11) (13 . 15) (14 . 16) (17 . 18) (19 . 20) (20 . 21)) 4.834 {9/46:78} B:0 SIMILARITY (1/min{score1}): 0.7252 [and 1/min{score2}: 0.5480] [2412, 201]: Comparing 1i6a_A and 1atg, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 21 (11 H + 10 S) secondary structure elements in 1atg, of which 18 satisfy the size requirements. 1.33085 [ 1.54907] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (13 . 14) (14 . 15) (17 . 17) (19 . 19) (20 . 20)) 5.363 {4/44:66} B:0 1.37359 [ 1.52881] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (11 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 19) (20 . 20)) 5.577 {6/52:78} B:0 1.39426 [ 1.50963] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (10 . 12) (11 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 19) (20 . 20)) 6.002 {8/64:91} B:0 2.61529 [ 3.06905] ((4 . 6) (5 . 7) (12 . 13) (13 . 14) (14 . 15) (17 . 17)) 3.832 {2/12:15} B:0 3.00032 [ 3.60019] ((4 . 6) (5 . 7) (12 . 13) (13 . 14) (20 . 21)) 6.910 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7514 [and 1/min{score2}: 0.6624] [2412, 552]: Comparing 1i6a_A and 1cb6_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 61 (34 H + 27 S) secondary structure elements in 1cb6_A, of which 28 satisfy the size requirements. 1.63240 [ 2.59896] ((1 . 32) (2 . 33) (3 . 34) (4 . 35) (5 . 36) (6 . 37) (7 . 38) (13 . 47) (14 . 55) (19 . 56) (20 . 57)) 6.261 {4/29:55} B:0 2.16079 [ 2.78690] ((1 . 32) (2 . 33) (3 . 34) (4 . 35) (5 . 36) (6 . 37) (7 . 38) (13 . 47) (14 . 48) (19 . 56) (20 . 57)) 5.867 {6/29:55} B:0 2.24400 [ 2.69252] ((1 . 32) (2 . 33) (3 . 34) (4 . 35) (5 . 36) (6 . 37) (7 . 38) (11 . 42) (13 . 47) (14 . 48) (19 . 56) (20 . 57)) 5.830 {7/32:66} B:0 3.01406 [ 5.60217] ((11 . 32) (12 . 34) (13 . 35) (14 . 36) (17 . 38)) 4.158 {1/9:10} B:0 3.03877 [ 5.60607] ((3 . 36) (5 . 38) (7 . 40) (14 . 45) (19 . 48)) 9.084 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.6126 [and 1/min{score2}: 0.3848] [2412, 905]: Comparing 1i6a_A and 1dpe, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 40 (21 H + 19 S) secondary structure elements in 1dpe, of which 34 satisfy the size requirements. 3.06912 [ 6.80614] ((5 . 27) (11 . 29) (12 . 31) (13 . 32) (14 . 33)) 5.188 {1/6:10} B:0 3.06926 [ 6.80615] ((1 . 29) (2 . 30) (3 . 31) (4 . 32) (7 . 33)) 6.480 {1/6:10} B:0 3.75016 [ 8.50001] ((13 . 21) (17 . 23) (19 . 24) (20 . 25)) 6.888 {0/2:6} B:0 3.75029 [ 8.50002] ((2 . 28) (4 . 30) (5 . 31) (7 . 33)) 7.926 {0/4:6} B:0 3.75029 [ 8.50003] ((3 . 24) (13 . 30) (14 . 31) (20 . 35)) 7.972 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5758 [and 1/min{score2}: 0.3405] [2412, 1204]: Comparing 1i6a_A and 1elj_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 33 (18 H + 15 S) secondary structure elements in 1elj_A, of which 26 satisfy the size requirements. 1.65603 [ 2.63428] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 11) (13 . 15) (19 . 25) (20 . 26)) 5.780 {3/24:45} B:0 1.85442 [ 2.36760] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 11) (13 . 19) (14 . 20) (17 . 22) (19 . 25) (20 . 26)) 4.360 {7/40:66} B:0 3.00030 [ 5.20006] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (7 . 5)) 6.804 {0/5:10} B:0 3.04188 [ 5.20819] ((13 . 19) (14 . 20) (17 . 22) (19 . 24) (20 . 26)) 13.128 {1/7:10} B:0 3.48633 [ 5.31479] ((4 . 8) (13 . 19) (14 . 20) (17 . 22) (20 . 26)) 8.837 {2/7:10} B:0 SIMILARITY (1/min{score1}): 0.6039 [and 1/min{score2}: 0.4224] [2412, 1264]: Comparing 1i6a_A and 1eu8_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 33 (20 H + 13 S) secondary structure elements in 1eu8_A, of which 30 satisfy the size requirements. 1.39744 [ 2.52167] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 12) (13 . 22) (14 . 23) (17 . 25) (19 . 26) (20 . 27)) 4.485 {4/37:66} B:0 1.92602 [ 2.52033] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 12) (11 . 16) (13 . 22) (14 . 23) (17 . 25) (19 . 26) (20 . 27)) 4.683 {8/43:78} B:0 3.00043 [ 6.00005] ((7 . 13) (10 . 15) (11 . 23) (13 . 24) (17 . 25)) 7.420 {0/4:10} B:0 3.02245 [ 6.00284] ((10 . 20) (13 . 22) (14 . 23) (17 . 25) (19 . 26)) 5.120 {1/8:10} B:0 3.75003 [ 7.50000] ((2 . 15) (3 . 23) (4 . 24) (5 . 25)) 4.672 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7270 [and 1/min{score2}: 0.3971] [2412, 1967]: Comparing 1i6a_A and 1gv8_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 16 (9 H + 7 S) secondary structure elements in 1gv8_A, of which 14 satisfy the size requirements. 2.15520 [ 2.01514] ((7 . 1) (11 . 3) (12 . 7) (13 . 9) (14 . 10) (17 . 13) (19 . 16)) 4.764 {1/12:21} B:0 3.03790 [ 2.84634] ((11 . 7) (13 . 9) (14 . 10) (17 . 13) (19 . 16)) 4.501 {1/7:10} B:0 3.75026 [ 3.50031] ((2 . 9) (3 . 10) (4 . 11) (5 . 13)) 7.713 {0/4:6} B:0 3.75028 [ 3.50034] ((1 . 3) (2 . 4) (3 . 7) (7 . 10)) 7.857 {0/2:6} B:0 3.75029 [ 3.50036] ((1 . 10) (2 . 12) (3 . 14) (5 . 16)) 7.965 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5308 [and 1/min{score2}: 0.5678] [2412, 2057]: Comparing 1i6a_A and 1h3d_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 24 (10 H + 14 S) secondary structure elements in 1h3d_A, of which 19 satisfy the size requirements. 1.84135 [ 1.94415] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (7 . 9) (10 . 10) (11 . 11) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 18) (20 . 19)) 6.379 {9/51:78} B:0 1.97488 [ 2.03902] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (5 . 6) (7 . 9) (10 . 10) (11 . 11) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 18) (20 . 19)) 6.263 {11/57:91} B:0 3.00014 [ 3.80007] ((7 . 9) (10 . 10) (11 . 11) (12 . 13) (14 . 17)) 5.577 {0/9:10} B:0 3.00926 [ 3.80457] ((10 . 10) (11 . 11) (12 . 13) (13 . 14) (14 . 17)) 4.146 {1/10:10} B:0 3.00926 [ 3.80457] ((10 . 10) (11 . 11) (12 . 13) (13 . 16) (14 . 17)) 4.190 {1/10:10} B:0 SIMILARITY (1/min{score1}): 0.5945 [and 1/min{score2}: 0.5245] [2412, 2412]: Comparing 1i6a_A and 1i6a_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (17 . 17) (19 . 19) (20 . 20)) 0.000 {0/81:105} B:0 2.50768 [ 2.50768] ((1 . 1) (2 . 2) (10 . 10) (11 . 12) (13 . 13) (20 . 20)) 1.724 {1/12:15} B:0 2.50768 [ 2.50768] ((1 . 1) (2 . 2) (10 . 10) (12 . 11) (13 . 13) (20 . 20)) 1.724 {1/12:15} B:0 3.06964 [ 3.06964] ((1 . 11) (3 . 12) (4 . 13) (5 . 14) (7 . 17)) 8.262 {1/6:10} B:0 3.06964 [ 3.06964] ((11 . 1) (12 . 3) (13 . 4) (14 . 5) (17 . 7)) 8.262 {1/6:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [2412, 2503]: Comparing 1i6a_A and 1ii5_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 23 (11 H + 12 S) secondary structure elements in 1ii5_A, of which 20 satisfy the size requirements. 1.48895 [ 1.63094] ((1 . 1) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 10) (10 . 12) (11 . 13) (12 . 15) (13 . 16) (14 . 17) (17 . 20) (19 . 21) (20 . 22)) 4.102 {9/64:105} B:0 1.49081 [ 1.67047] ((1 . 1) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 10) (10 . 12) (11 . 13) (12 . 15) (13 . 16) (14 . 17) (17 . 20) (19 . 21) (20 . 22)) 3.509 {8/58:91} B:0 3.00094 [ 4.00040] ((2 . 16) (3 . 17) (4 . 18) (5 . 20) (7 . 21)) 9.038 {0/6:10} B:0 3.03839 [ 4.01641] ((2 . 14) (3 . 15) (4 . 16) (5 . 17) (7 . 20)) 7.958 {1/7:10} B:0 3.06930 [ 4.02993] ((4 . 6) (7 . 10) (10 . 12) (13 . 18) (14 . 20)) 6.760 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.6716 [and 1/min{score2}: 0.6131] [2412, 2646]: Comparing 1i6a_A and 1ixc_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 22 (12 H + 10 S) secondary structure elements in 1ixc_A, of which 17 satisfy the size requirements. 1.19573 [ 1.30503] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9) (7 . 10) (10 . 13) (11 . 14) (12 . 16) (13 . 17) (14 . 18) (17 . 20) (19 . 21) (20 . 22)) 2.286 {6/65:91} B:0 1.57945 [ 1.75622] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9) (7 . 10) (13 . 15) (17 . 20) (19 . 21) (20 . 22)) 5.655 {3/29:45} B:0 1.89115 [ 2.05416] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9) (7 . 10) (13 . 15) (19 . 21) (20 . 22)) 5.354 {3/20:36} B:0 3.03845 [ 3.42661] ((1 . 5) (2 . 6) (12 . 14) (13 . 15) (20 . 22)) 8.183 {1/7:10} B:0 3.75027 [ 4.25019] ((3 . 14) (4 . 15) (5 . 16) (13 . 22)) 7.825 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.9106 [and 1/min{score2}: 0.8111] [2412, 2648]: Comparing 1i6a_A and 1ixh, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 27 (13 H + 14 S) secondary structure elements in 1ixh, of which 23 satisfy the size requirements. 3.00058 [ 4.60016] ((2 . 4) (3 . 5) (4 . 6) (5 . 7) (17 . 15)) 8.019 {0/6:10} B:0 3.00084 [ 4.60023] ((2 . 4) (3 . 5) (4 . 6) (5 . 7) (12 . 12)) 8.769 {0/5:10} B:0 3.00085 [ 4.60023] ((1 . 3) (2 . 4) (3 . 5) (5 . 7) (14 . 15)) 8.799 {0/2:10} B:0 3.03861 [ 4.61088] ((3 . 5) (4 . 6) (5 . 7) (7 . 8) (17 . 15)) 8.666 {1/7:10} B:0 3.06937 [ 4.61979] ((2 . 6) (11 . 12) (12 . 15) (13 . 16) (14 . 17)) 7.160 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.4851 [and 1/min{score2}: 0.3981] [2412, 2700]: Comparing 1i6a_A and 1j1n_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 37 (22 H + 15 S) secondary structure elements in 1j1n_A, of which 34 satisfy the size requirements. 1.57049 [ 3.40647] ((1 . 1) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 11) (13 . 21) (19 . 25) (20 . 26)) 6.076 {2/20:45} B:0 2.29783 [ 3.27965] ((1 . 1) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 11) (13 . 21) (14 . 22) (19 . 25) (20 . 26)) 6.890 {6/27:55} B:0 3.00123 [ 6.80011] ((2 . 21) (3 . 22) (4 . 23) (5 . 24) (12 . 29)) 9.652 {0/7:10} B:0 3.31077 [ 6.83091] ((1 . 1) (2 . 3) (4 . 5) (6 . 7) (10 . 9)) 8.639 {2/8:10} B:0 3.48588 [ 6.85239] ((1 . 11) (10 . 20) (13 . 21) (14 . 22) (17 . 24)) 5.782 {2/7:10} B:0 SIMILARITY (1/min{score1}): 0.6367 [and 1/min{score2}: 0.3049] [2412, 2841]: Comparing 1i6a_A and 1jet_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 43 (24 H + 19 S) secondary structure elements in 1jet_A, of which 34 satisfy the size requirements. 3.00027 [ 6.80002] ((11 . 18) (12 . 21) (13 . 22) (19 . 26) (20 . 27)) 6.610 {0/6:10} B:0 3.75005 [ 8.50000] ((3 . 21) (4 . 22) (6 . 23) (7 . 25)) 5.218 {0/3:6} B:0 3.75015 [ 8.50001] ((12 . 21) (13 . 22) (19 . 26) (20 . 28)) 6.804 {0/3:6} B:0 3.75031 [ 8.50003] ((2 . 33) (5 . 34) (7 . 36) (10 . 38)) 8.075 {0/4:6} B:0 3.75047 [ 8.50004] ((3 . 21) (4 . 22) (6 . 23) (13 . 31)) 8.989 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.7220 [and 1/min{score2}: 0.4022] [2412, 3723]: Comparing 1i6a_A and 1lst, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 24 (12 H + 12 S) secondary structure elements in 1lst, of which 18 satisfy the size requirements. 1.69799 [ 1.81841] ((1 . 1) (2 . 4) (3 . 5) (4 . 6) (7 . 10) (10 . 11) (11 . 12) (12 . 15) (13 . 16) (14 . 17) (17 . 20) (20 . 23)) 5.697 {7/45:66} B:0 2.08796 [ 2.13837] ((1 . 1) (2 . 4) (3 . 5) (4 . 6) (6 . 8) (7 . 10) (10 . 11) (11 . 12) (12 . 15) (13 . 16) (14 . 17) (17 . 20) (20 . 23)) 5.590 {11/54:78} B:0 3.03846 [ 3.62248] ((2 . 13) (3 . 15) (4 . 16) (5 . 17) (7 . 20)) 8.208 {1/7:10} B:0 3.75014 [ 4.50008] ((11 . 1) (12 . 5) (13 . 6) (20 . 11)) 6.631 {0/3:6} B:0 3.75015 [ 4.50009] ((1 . 1) (14 . 15) (17 . 17) (20 . 23)) 6.750 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5889 [and 1/min{score2}: 0.5499] [2412, 4009]: Comparing 1i6a_A and 1mqi_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 25 (12 H + 13 S) secondary structure elements in 1mqi_A, of which 21 satisfy the size requirements. 3.06921 [ 4.22587] ((2 . 6) (3 . 7) (10 . 14) (17 . 19) (20 . 24)) 6.091 {1/6:10} B:0 3.46803 [ 3.78190] ((1 . 1) (2 . 6) (3 . 7) (7 . 11) (17 . 13) (19 . 22) (20 . 24)) 9.254 {5/15:21} B:0 3.48580 [ 4.40878] ((1 . 7) (13 . 18) (14 . 19) (17 . 21) (20 . 24)) 3.567 {2/7:10} B:0 3.75003 [ 5.25001] ((2 . 10) (10 . 18) (11 . 19) (12 . 21)) 4.348 {0/4:6} B:0 3.75005 [ 5.25002] ((1 . 1) (2 . 6) (3 . 7) (6 . 8)) 5.198 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5598 [and 1/min{score2}: 0.5063] [2412, 4254]: Comparing 1i6a_A and 1nh8_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 26 (10 H + 16 S) secondary structure elements in 1nh8_A, of which 20 satisfy the size requirements. 1.79360 [ 2.14796] ((5 . 6) (7 . 9) (10 . 10) (11 . 11) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 18) (20 . 20)) 5.719 {5/33:45} B:0 1.96757 [ 2.17691] ((4 . 5) (5 . 6) (7 . 9) (10 . 10) (11 . 11) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 18) (20 . 20)) 5.567 {7/38:55} B:0 2.82233 [ 3.48699] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (5 . 6) (20 . 20)) 2.915 {2/9:15} B:0 3.75004 [ 5.00001] ((1 . 4) (2 . 5) (3 . 6) (13 . 16)) 4.692 {0/2:6} B:0 3.75010 [ 5.00004] ((10 . 7) (13 . 12) (14 . 13) (17 . 15)) 6.132 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5575 [and 1/min{score2}: 0.4656] [2412, 4320]: Comparing 1i6a_A and 1nnf_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 27 (17 H + 10 S) secondary structure elements in 1nnf_A, of which 22 satisfy the size requirements. 1.76399 [ 2.17125] ((2 . 2) (3 . 3) (6 . 4) (7 . 8) (10 . 10) (11 . 15) (13 . 16) (14 . 17) (17 . 20) (19 . 22) (20 . 23)) 4.975 {6/38:55} B:0 1.78504 [ 1.92670] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (10 . 10) (11 . 12) (12 . 15) (13 . 16) (14 . 17) (17 . 20) (19 . 22) (20 . 23)) 4.244 {12/69:105} B:0 2.04012 [ 2.16827] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (10 . 10) (11 . 12) (12 . 15) (13 . 16) (14 . 17) (19 . 22) (20 . 23)) 4.278 {11/55:91} B:0 2.51087 [ 3.67013] ((1 . 5) (11 . 12) (12 . 15) (13 . 16) (14 . 17) (17 . 20)) 2.636 {1/11:15} B:0 2.51592 [ 3.67175] ((1 . 5) (12 . 15) (13 . 16) (14 . 17) (17 . 20) (19 . 22)) 4.131 {1/10:15} B:0 SIMILARITY (1/min{score1}): 0.7412 [and 1/min{score2}: 0.5660] [2412, 4506]: Comparing 1i6a_A and 1o63_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 20 (8 H + 12 S) secondary structure elements in 1o63_A, of which 20 satisfy the size requirements. 1.45191 [ 1.69598] ((1 . 1) (2 . 2) (3 . 5) (4 . 6) (5 . 7) (7 . 9) (11 . 11) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 18) (20 . 20)) 5.638 {6/47:78} B:0 1.53429 [ 1.89927] ((1 . 1) (2 . 2) (3 . 5) (4 . 6) (5 . 7) (7 . 9) (11 . 10) (12 . 15) (13 . 16) (19 . 18) (20 . 20)) 5.088 {3/25:55} B:0 1.66282 [ 1.84050] ((1 . 1) (2 . 2) (3 . 5) (4 . 6) (5 . 7) (7 . 10) (11 . 11) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 18) (20 . 20)) 5.813 {7/45:78} B:0 2.14819 [ 2.85940] ((1 . 1) (2 . 2) (5 . 7) (7 . 9) (12 . 13) (19 . 18) (20 . 20)) 5.423 {1/15:21} B:0 2.52412 [ 3.34361] ((1 . 11) (2 . 12) (3 . 13) (4 . 14) (5 . 15) (7 . 18)) 4.378 {1/9:15} B:0 SIMILARITY (1/min{score1}): 0.6887 [and 1/min{score2}: 0.5896] [2412, 4939]: Comparing 1i6a_A and 1p99_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 27 (14 H + 13 S) secondary structure elements in 1p99_A, of which 20 satisfy the size requirements. 3.00002 [ 4.00001] ((11 . 1) (12 . 3) (13 . 4) (14 . 5) (17 . 7)) 3.647 {0/7:10} B:0 3.00038 [ 4.00016] ((2 . 4) (5 . 7) (12 . 15) (19 . 22) (20 . 24)) 7.207 {0/4:10} B:0 3.00043 [ 4.00018] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (7 . 5)) 7.436 {0/2:10} B:0 3.00200 [ 4.00085] ((1 . 3) (2 . 4) (5 . 7) (19 . 22) (20 . 24)) 10.916 {0/4:10} B:0 3.75017 [ 5.00007] ((1 . 10) (2 . 11) (3 . 14) (11 . 22)) 6.916 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.5035 [and 1/min{score2}: 0.4052] [2412, 4957]: Comparing 1i6a_A and 1pb7_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 25 (10 H + 15 S) secondary structure elements in 1pb7_A, of which 22 satisfy the size requirements. 2.14314 [ 3.14295] ((4 . 5) (7 . 13) (10 . 17) (13 . 18) (14 . 19) (17 . 21) (19 . 22)) 5.210 {0/13:21} B:0 3.00090 [ 4.40029] ((2 . 5) (4 . 9) (6 . 11) (13 . 17) (20 . 24)) 8.943 {0/5:10} B:0 3.48608 [ 4.58387] ((4 . 11) (11 . 13) (12 . 19) (13 . 20) (14 . 21)) 7.614 {2/7:10} B:0 3.48620 [ 4.58392] ((1 . 4) (2 . 5) (4 . 9) (6 . 11) (20 . 24)) 8.259 {2/7:10} B:0 3.75013 [ 5.50004] ((1 . 3) (2 . 5) (3 . 6) (6 . 9)) 6.505 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7694 [and 1/min{score2}: 0.5406] [2412, 4982]: Comparing 1i6a_A and 1pda, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 25 (12 H + 13 S) secondary structure elements in 1pda, of which 15 satisfy the size requirements. 3.00002 [ 3.00002] ((1 . 1) (2 . 2) (3 . 3) (17 . 14) (20 . 19)) 3.342 {0/5:10} B:0 3.00025 [ 3.00025] ((1 . 9) (2 . 11) (3 . 12) (4 . 13) (5 . 14)) 6.464 {0/5:10} B:0 3.03787 [ 3.03787] ((2 . 11) (3 . 12) (4 . 13) (5 . 14) (6 . 15)) 3.921 {1/7:10} B:0 3.75001 [ 3.75001] ((11 . 3) (13 . 5) (14 . 6) (17 . 8)) 3.122 {0/5:6} B:0 3.75004 [ 3.75004] ((11 . 1) (12 . 3) (13 . 5) (17 . 6)) 4.783 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6034 [and 1/min{score2}: 0.6034] [2412, 5070]: Comparing 1i6a_A and 1pot, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 25 (16 H + 9 S) secondary structure elements in 1pot, of which 22 satisfy the size requirements. 2.55368 [ 2.72413] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 5) (7 . 8) (11 . 11) (14 . 16) (17 . 18) (19 . 19) (20 . 20)) 4.570 {8/32:55} B:0 3.75018 [ 5.50006] ((3 . 16) (4 . 17) (5 . 18) (7 . 19)) 7.043 {0/4:6} B:0 3.75027 [ 5.50008] ((4 . 5) (12 . 11) (13 . 12) (17 . 14)) 7.782 {0/4:6} B:0 3.75028 [ 5.50009] ((5 . 8) (12 . 14) (13 . 15) (20 . 21)) 7.892 {0/1:6} B:0 3.75098 [ 5.50031] ((3 . 1) (4 . 2) (6 . 4) (14 . 11)) 10.789 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.3916 [and 1/min{score2}: 0.3671] [2412, 5192]: Comparing 1i6a_A and 1q35_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 27 (18 H + 9 S) secondary structure elements in 1q35_A, of which 23 satisfy the size requirements. 1.81800 [ 2.08641] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 9) (10 . 10) (13 . 16) (14 . 17) (17 . 20) (19 . 21) (20 . 22)) 3.836 {8/46:78} B:0 2.56421 [ 3.85171] ((1 . 5) (13 . 16) (14 . 17) (17 . 20) (19 . 21) (20 . 22)) 4.308 {1/7:15} B:0 3.00035 [ 4.60010] ((1 . 1) (2 . 2) (3 . 3) (6 . 4) (7 . 5)) 7.052 {0/5:10} B:0 3.00038 [ 4.60011] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (7 . 5)) 7.196 {0/5:10} B:0 3.75015 [ 5.75004] ((11 . 3) (12 . 5) (13 . 6) (19 . 9)) 6.796 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5829 [and 1/min{score2}: 0.4793] [2412, 5599]: Comparing 1i6a_A and 1r9l_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 27 (15 H + 12 S) secondary structure elements in 1r9l_A, of which 22 satisfy the size requirements. 1.94340 [ 2.08902] ((1 . 2) (2 . 3) (4 . 6) (5 . 7) (6 . 8) (7 . 11) (10 . 13) (11 . 15) (12 . 17) (13 . 18) (14 . 19) (17 . 21) (19 . 22) (20 . 24)) 4.891 {11/58:91} B:0 2.05346 [ 2.21819] ((1 . 2) (2 . 3) (4 . 6) (5 . 7) (6 . 8) (7 . 11) (10 . 13) (11 . 15) (12 . 17) (13 . 18) (14 . 19) (19 . 22) (20 . 24)) 4.785 {9/45:78} B:0 3.00040 [ 4.40013] ((1 . 2) (2 . 3) (4 . 6) (6 . 8) (14 . 17)) 7.286 {0/4:10} B:0 3.13852 [ 4.44631] ((1 . 15) (2 . 16) (3 . 17) (4 . 18) (7 . 19)) 6.612 {1/5:10} B:0 3.75006 [ 5.50002] ((1 . 10) (10 . 18) (11 . 19) (12 . 21)) 5.392 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5146 [and 1/min{score2}: 0.4787] [2412, 5730]: Comparing 1i6a_A and 1ryo_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 28 (14 H + 14 S) secondary structure elements in 1ryo_A, of which 25 satisfy the size requirements. 1.65641 [ 2.53854] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 9) (14 . 11) (17 . 17) (19 . 24) (20 . 25)) 6.292 {3/24:45} B:0 1.66295 [ 2.35713] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 9) (11 . 11) (13 . 16) (14 . 17) (17 . 20) (19 . 23)) 6.343 {4/28:55} B:0 2.50795 [ 4.16839] ((11 . 1) (12 . 3) (13 . 4) (14 . 5) (17 . 7) (19 . 9)) 5.772 {1/12:15} B:0 2.82285 [ 4.24866] ((2 . 2) (3 . 3) (4 . 4) (5 . 5) (11 . 11) (13 . 13)) 7.462 {2/9:15} B:0 3.00014 [ 5.00003] ((11 . 1) (12 . 3) (13 . 4) (14 . 5) (19 . 7)) 5.612 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.6037 [and 1/min{score2}: 0.4366] [2412, 5788]: Comparing 1i6a_A and 1sbp, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 30 (17 H + 13 S) secondary structure elements in 1sbp, of which 26 satisfy the size requirements. 1.23183 [ 2.01636] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 10) (10 . 11) (12 . 15) (13 . 16) (14 . 17) (17 . 19) (19 . 21) (20 . 23)) 5.525 {5/59:78} B:0 1.46351 [ 1.97338] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 10) (10 . 11) (12 . 15) (13 . 16) (14 . 17) (17 . 19) (19 . 21) (20 . 23)) 5.484 {9/67:91} B:0 2.50635 [ 4.33456] ((1 . 3) (12 . 15) (13 . 16) (14 . 17) (17 . 19) (19 . 20)) 7.499 {1/13:15} B:0 2.58522 [ 4.35045] ((1 . 3) (12 . 15) (13 . 16) (14 . 17) (17 . 19) (20 . 23)) 3.615 {2/13:15} B:0 3.75006 [ 6.50001] ((3 . 17) (4 . 18) (5 . 19) (13 . 28)) 5.279 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8118 [and 1/min{score2}: 0.5067] [2412, 6029]: Comparing 1i6a_A and 1uiu_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 42 (19 H + 23 S) secondary structure elements in 1uiu_A, of which 33 satisfy the size requirements. 3.03847 [ 6.60368] ((1 . 31) (2 . 32) (3 . 33) (4 . 34) (10 . 38)) 8.232 {1/7:10} B:0 3.06922 [ 6.60672] ((1 . 17) (3 . 19) (4 . 20) (5 . 21) (6 . 22)) 6.185 {1/6:10} B:0 3.06938 [ 6.60673] ((1 . 31) (2 . 32) (3 . 33) (4 . 34) (7 . 35)) 7.172 {1/6:10} B:0 3.13874 [ 6.61392] ((1 . 21) (5 . 24) (14 . 31) (19 . 35) (20 . 36)) 7.790 {1/5:10} B:0 3.75004 [ 8.25000] ((5 . 24) (14 . 33) (19 . 35) (20 . 36)) 4.914 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6566 [and 1/min{score2}: 0.3913] [2412, 6082]: Comparing 1i6a_A and 1uqw_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 41 (20 H + 21 S) secondary structure elements in 1uqw_A, of which 33 satisfy the size requirements. 3.48587 [ 6.65721] ((5 . 26) (11 . 28) (12 . 30) (13 . 31) (14 . 32)) 5.609 {2/7:10} B:0 3.75024 [ 8.25002] ((2 . 10) (3 . 12) (4 . 13) (11 . 17)) 7.559 {0/4:6} B:0 3.75028 [ 8.25003] ((1 . 7) (2 . 8) (3 . 11) (12 . 18)) 7.911 {0/1:6} B:0 3.75035 [ 8.25003] ((2 . 27) (4 . 29) (5 . 30) (7 . 32)) 8.364 {0/4:6} B:0 3.75037 [ 8.25003] ((5 . 22) (14 . 28) (19 . 32) (20 . 33)) 8.434 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4051 [and 1/min{score2}: 0.2744] [2412, 6089]: Comparing 1i6a_A and 1urs_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 34 (18 H + 16 S) secondary structure elements in 1urs_A, of which 26 satisfy the size requirements. 1.33958 [ 2.18556] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 11) (13 . 20) (14 . 21) (17 . 23) (19 . 24) (20 . 25)) 4.503 {3/32:66} B:0 1.49429 [ 2.39205] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 11) (11 . 21) (17 . 23) (19 . 24) (20 . 25)) 3.993 {3/27:55} B:0 1.49445 [ 2.39209] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 11) (14 . 21) (17 . 23) (19 . 24) (20 . 25)) 4.475 {3/27:55} B:0 3.02245 [ 5.20435] ((10 . 19) (13 . 20) (14 . 21) (17 . 23) (19 . 24)) 5.171 {1/8:10} B:0 3.75014 [ 6.50003] ((11 . 1) (12 . 3) (13 . 4) (20 . 8)) 6.600 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7465 [and 1/min{score2}: 0.4575] [2412, 6092]: Comparing 1i6a_A and 1us5_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 25 (14 H + 11 S) secondary structure elements in 1us5_A, of which 24 satisfy the size requirements. 1.29907 [ 1.78564] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 8) (10 . 9) (11 . 10) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 20) (20 . 21)) 4.448 {6/54:91} B:0 1.76629 [ 1.97733] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 8) (10 . 9) (11 . 10) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 20) (20 . 21)) 4.528 {11/64:105} B:0 2.50002 [ 4.00000] ((1 . 3) (7 . 8) (11 . 10) (13 . 14) (14 . 15) (17 . 17)) 2.916 {0/5:15} B:0 2.50003 [ 4.00001] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (12 . 10)) 3.389 {0/6:15} B:0 2.52406 [ 4.00595] ((1 . 3) (7 . 8) (10 . 9) (11 . 10) (14 . 15) (17 . 17)) 3.101 {1/9:15} B:0 SIMILARITY (1/min{score1}): 0.7698 [and 1/min{score2}: 0.5600] [2412, 6328]: Comparing 1i6a_A and 1wdn_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 21 (8 H + 13 S) secondary structure elements in 1wdn_A, of which 20 satisfy the size requirements. 1.41347 [ 1.67231] ((1 . 1) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 10) (11 . 11) (13 . 14) (14 . 15) (17 . 17) (19 . 19) (20 . 20)) 4.668 {5/41:78} B:0 1.46529 [ 1.65250] ((1 . 1) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 10) (11 . 11) (12 . 13) (13 . 14) (14 . 15) (17 . 17) (19 . 19) (20 . 20)) 4.830 {7/52:91} B:0 3.00024 [ 4.00010] ((2 . 4) (3 . 5) (5 . 7) (7 . 10) (11 . 13)) 6.413 {0/6:10} B:0 3.03841 [ 4.01642] ((2 . 12) (3 . 13) (4 . 14) (5 . 15) (7 . 17)) 8.036 {1/7:10} B:0 3.06950 [ 4.03001] ((12 . 5) (13 . 6) (14 . 7) (19 . 10) (20 . 12)) 7.729 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.7075 [and 1/min{score2}: 0.6051] [2412, 6581]: Comparing 1i6a_A and 3mbp, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 33 (16 H + 17 S) secondary structure elements in 3mbp, of which 27 satisfy the size requirements. 1.52794 [ 2.31332] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 12) (13 . 21) (14 . 22) (17 . 24) (19 . 25) (20 . 26)) 5.250 {5/38:66} B:0 3.00494 [ 5.40085] ((2 . 9) (12 . 22) (13 . 23) (14 . 24) (20 . 27)) 13.680 {0/6:10} B:0 3.02246 [ 5.40389] ((10 . 20) (13 . 21) (14 . 22) (17 . 24) (19 . 25)) 5.203 {1/8:10} B:0 3.06960 [ 5.41231] ((2 . 9) (12 . 22) (13 . 23) (14 . 24) (19 . 25)) 8.137 {1/6:10} B:0 3.75013 [ 6.75002] ((2 . 20) (3 . 22) (4 . 23) (5 . 24)) 6.526 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6545 [and 1/min{score2}: 0.4323] [2412, 6600]: Comparing 1i6a_A and 3thi_A, based on their crossing files. There are 20 (8 H + 12 S) secondary structure elements in 1i6a_A, of which 15 satisfy the size requirements. There are 33 (19 H + 14 S) secondary structure elements in 3thi_A, of which 26 satisfy the size requirements. 1.34555 [ 2.18694] ((1 . 1) (2 . 2) (3 . 3) (5 . 4) (6 . 5) (7 . 12) (10 . 18) (13 . 20) (14 . 21) (17 . 24) (19 . 25) (20 . 26)) 5.485 {4/42:66} B:0 1.41233 [ 2.20350] ((1 . 1) (2 . 2) (3 . 3) (5 . 4) (6 . 5) (7 . 12) (11 . 16) (13 . 20) (14 . 21) (17 . 24) (19 . 25) (20 . 26)) 5.415 {4/36:66} B:0 1.49136 [ 2.09257] ((1 . 1) (2 . 2) (3 . 3) (5 . 4) (6 . 5) (7 . 12) (10 . 15) (11 . 16) (13 . 20) (14 . 21) (17 . 24) (19 . 25) (20 . 26)) 5.490 {6/45:78} B:0 3.75022 [ 6.50004] ((12 . 4) (13 . 9) (17 . 12) (19 . 13)) 7.407 {0/5:6} B:0 3.75028 [ 6.50005] ((5 . 13) (6 . 14) (13 . 18) (19 . 24)) 7.873 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.7432 [and 1/min{score2}: 0.4811] -------------------------------------------------------------------------------------------------------------------------