------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2503 1ii5_A) ( 82 1a99_A) 0.4131 0.4030 4.8776 ( 21 88 136) 0 0.5471 0.4491 20 26 ( 2503 1ii5_A) ( 146 1al3 ) 0.3995 0.4204 3.3823 ( 1 15 28) 0 0.3995 0.4204 20 19 ( 2503 1ii5_A) ( 157 1amf ) 0.5596 0.5596 7.0323 ( 5 40 66) 0 0.6986 0.6986 20 20 ( 2503 1ii5_A) ( 201 1atg ) 0.6471 0.6956 5.5055 ( 5 45 91) 0 0.6628 0.7187 20 18 ( 2503 1ii5_A) ( 552 1cb6_A) 0.6959 0.5665 5.5173 ( 11 89 136) 0 0.6959 0.5820 20 28 ( 2503 1ii5_A) ( 905 1dpe ) 0.3000 0.1765 5.6061 ( 0 9 15) 0 0.6009 0.3782 20 34 ( 2503 1ii5_A) ( 1204 1elj_A) 0.3993 0.3599 7.0413 ( 9 39 55) 0 0.5276 0.4692 20 26 ( 2503 1ii5_A) ( 1264 1eu8_A) 0.5788 0.4800 5.3455 ( 11 69 120) 0 0.6021 0.4800 20 30 ( 2503 1ii5_A) ( 1967 1gv8_A) 0.4394 0.5891 4.3565 ( 3 24 36) 0 0.4499 0.6425 20 14 ( 2503 1ii5_A) ( 2057 1h3d_A) 0.6286 0.6402 4.7913 ( 11 78 120) 0 0.6286 0.6402 20 19 ( 2503 1ii5_A) ( 2412 1i6a_A) 0.6131 0.6716 4.1020 ( 9 64 105) 0 0.6131 0.6716 20 15 ( 2503 1ii5_A) ( 2503 1ii5_A) 1.0000 1.0000 0.0000 ( 0 150 190) 0 1.0000 1.0000 20 20 ( 2503 1ii5_A) ( 2646 1ixc_A) 0.5675 0.5819 4.5921 ( 16 96 136) 0 0.5675 0.5819 20 17 ( 2503 1ii5_A) ( 2648 1ixh ) 0.6613 0.6224 4.7830 ( 12 89 136) 0 0.6918 0.6224 20 23 ( 2503 1ii5_A) ( 2700 1j1n_A) 0.2570 0.1931 6.2694 ( 5 14 21) 0 0.4388 0.3315 20 34 ( 2503 1ii5_A) ( 2841 1jet_A) 0.5471 0.3233 4.9955 ( 2 29 55) 0 0.5799 0.3733 20 34 ( 2503 1ii5_A) ( 3723 1lst ) 0.7985 0.8864 2.8457 ( 3 83 120) 0 0.8463 0.9382 20 18 ( 2503 1ii5_A) ( 4009 1mqi_A) 0.5044 0.5002 4.7388 ( 15 79 120) 0 0.8199 0.7856 20 21 ( 2503 1ii5_A) ( 4254 1nh8_A) 0.5785 0.5785 4.2230 ( 11 71 105) 0 0.5785 0.5785 20 20 ( 2503 1ii5_A) ( 4320 1nnf_A) 0.4932 0.4503 6.2152 ( 3 31 45) 0 0.6796 0.6438 20 22 ( 2503 1ii5_A) ( 4506 1o63_A) 0.4326 0.4326 3.8537 ( 12 54 91) 0 0.5776 0.5776 20 20 ( 2503 1ii5_A) ( 4939 1p99_A) 0.4364 0.4364 6.2992 ( 2 15 36) 0 0.5664 0.5664 20 20 ( 2503 1ii5_A) ( 4957 1pb7_A) 0.3000 0.2727 5.9012 ( 0 10 15) 0 0.7993 0.7269 20 22 ( 2503 1ii5_A) ( 4982 1pda ) 0.5866 0.6316 5.4444 ( 10 66 105) 0 0.5866 0.6629 20 15 ( 2503 1ii5_A) ( 5070 1pot ) 0.6000 0.5798 4.5075 ( 10 66 120) 0 0.6570 0.6084 20 22 ( 2503 1ii5_A) ( 5192 1q35_A) 0.7191 0.6510 3.8154 ( 8 75 120) 0 0.7191 0.6510 20 23 ( 2503 1ii5_A) ( 5599 1r9l_A) 0.7303 0.6903 4.3100 ( 10 89 136) 0 0.7303 0.6903 20 22 ( 2503 1ii5_A) ( 5730 1ryo_A) 0.4000 0.3200 4.9422 ( 0 19 28) 0 0.5256 0.4508 20 25 ( 2503 1ii5_A) ( 5788 1sbp ) 0.7235 0.5913 4.9281 ( 9 86 120) 0 0.7235 0.5913 20 26 ( 2503 1ii5_A) ( 6029 1uiu_A) 0.3797 0.3303 5.2348 ( 12 47 78) 0 0.6674 0.4689 20 33 ( 2503 1ii5_A) ( 6082 1uqw_A) 0.2500 0.1515 5.8060 ( 0 5 10) 0 0.4946 0.3026 20 33 ( 2503 1ii5_A) ( 6089 1urs_A) 0.5173 0.4822 5.0169 ( 14 76 120) 0 0.5249 0.4822 20 26 ( 2503 1ii5_A) ( 6092 1us5_A) 0.7174 0.6556 3.9033 ( 12 98 153) 0 0.8886 0.7454 20 24 ( 2503 1ii5_A) ( 6328 1wdn_A) 0.8497 0.8497 1.8021 ( 2 89 136) 0 0.8497 0.8497 20 20 ( 2503 1ii5_A) ( 6581 3mbp ) 0.7422 0.5538 4.8042 ( 4 67 105) 0 0.7422 0.5538 20 27 ( 2503 1ii5_A) ( 6600 3thi_A) 0.5540 0.5069 5.7808 ( 12 71 120) 0 0.5669 0.5069 20 26 -------------------------------------------------------------------------------------------------------------------------