------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2700 1j1n_A) ( 82 1a99_A) 0.4287 0.5348 7.0721 ( 10 75 105) 0 0.6003 0.7094 34 26 ( 2700 1j1n_A) ( 146 1al3 ) 0.1706 0.1959 8.0611 ( 8 16 21) 0 0.4328 0.5609 34 19 ( 2700 1j1n_A) ( 157 1amf ) 0.4908 0.6382 6.5957 ( 16 110 153) 0 0.5015 0.6828 34 20 ( 2700 1j1n_A) ( 201 1atg ) 0.4462 0.6277 6.1003 ( 12 81 120) 0 0.4462 0.6389 34 18 ( 2700 1j1n_A) ( 552 1cb6_A) 0.4027 0.4386 7.1461 ( 17 83 120) 1 0.4649 0.5121 34 28 ( 2700 1j1n_A) ( 905 1dpe ) 0.1471 0.1471 7.6269 ( 0 6 10) 0 0.3046 0.3046 34 34 ( 2700 1j1n_A) ( 1204 1elj_A) 0.6487 0.7948 6.1352 ( 17 177 253) 0 0.6487 0.7948 34 26 ( 2700 1j1n_A) ( 1264 1eu8_A) 0.6349 0.6686 5.4130 ( 30 224 325) 0 0.6349 0.6686 34 30 ( 2700 1j1n_A) ( 1967 1gv8_A) 0.2644 0.6220 4.0747 ( 2 21 36) 0 0.2644 0.6220 34 14 ( 2700 1j1n_A) ( 2057 1h3d_A) 0.2349 0.4149 4.5001 ( 2 17 28) 0 0.3411 0.5024 34 19 ( 2700 1j1n_A) ( 2412 1i6a_A) 0.3049 0.4352 6.8898 ( 6 27 55) 0 0.3049 0.6367 34 15 ( 2700 1j1n_A) ( 2503 1ii5_A) 0.3463 0.5287 6.2793 ( 6 40 66) 0 0.3463 0.5287 34 20 ( 2700 1j1n_A) ( 2646 1ixc_A) 0.3288 0.4465 7.4713 ( 9 42 66) 0 0.3684 0.5602 34 17 ( 2700 1j1n_A) ( 2648 1ixh ) 0.3499 0.5022 6.0298 ( 5 41 66) 0 0.4690 0.6752 34 23 ( 2700 1j1n_A) ( 2700 1j1n_A) 1.0000 1.0000 0.0000 ( 0 471 561) 0 1.0000 1.0000 34 34 ( 2700 1j1n_A) ( 2841 1jet_A) 0.2137 0.2137 8.3014 ( 11 27 36) 1 0.2914 0.2914 34 34 ( 2700 1j1n_A) ( 3723 1lst ) 0.3957 0.5820 6.3792 ( 10 64 91) 0 0.3957 0.5820 34 18 ( 2700 1j1n_A) ( 4009 1mqi_A) 0.3529 0.4120 5.5906 ( 14 60 91) 0 0.4107 0.6551 34 21 ( 2700 1j1n_A) ( 4254 1nh8_A) 0.1471 0.2500 3.7075 ( 0 7 10) 0 0.3225 0.5366 34 20 ( 2700 1j1n_A) ( 4320 1nnf_A) 0.4693 0.7164 6.3111 ( 5 75 120) 0 0.5049 0.7164 34 22 ( 2700 1j1n_A) ( 4506 1o63_A) 0.2758 0.3671 6.1777 ( 5 20 45) 0 0.3321 0.5404 34 20 ( 2700 1j1n_A) ( 4939 1p99_A) 0.1764 0.2996 6.9747 ( 1 11 15) 0 0.4272 0.6212 34 20 ( 2700 1j1n_A) ( 4957 1pb7_A) 0.1176 0.1818 5.2023 ( 0 6 6) 0 0.4380 0.6562 34 22 ( 2700 1j1n_A) ( 4982 1pda ) 0.1470 0.3325 15.3183 ( 0 3 10) 0 0.3903 0.6040 34 15 ( 2700 1j1n_A) ( 5070 1pot ) 0.1470 0.2270 5.3121 ( 1 9 10) 0 0.4924 0.5847 34 22 ( 2700 1j1n_A) ( 5192 1q35_A) 0.4938 0.6999 6.7851 ( 8 85 136) 0 0.5403 0.6999 34 23 ( 2700 1j1n_A) ( 5599 1r9l_A) 0.3515 0.3889 7.1514 ( 16 64 105) 0 0.3784 0.4363 34 22 ( 2700 1j1n_A) ( 5730 1ryo_A) 0.3981 0.4454 7.0709 ( 17 81 120) 1 0.4048 0.4575 34 25 ( 2700 1j1n_A) ( 5788 1sbp ) 0.5227 0.6229 6.4580 ( 17 128 171) 0 0.5227 0.6229 34 26 ( 2700 1j1n_A) ( 6029 1uiu_A) 0.1829 0.1862 9.2550 ( 6 14 21) 0 0.3664 0.3732 34 33 ( 2700 1j1n_A) ( 6082 1uqw_A) 0.1176 0.1212 5.1165 ( 0 5 6) 0 0.2935 0.2976 34 33 ( 2700 1j1n_A) ( 6089 1urs_A) 0.6132 0.7101 5.8443 ( 22 179 253) 0 0.6213 0.7275 34 26 ( 2700 1j1n_A) ( 6092 1us5_A) 0.1471 0.2083 6.3994 ( 0 5 10) 0 0.4682 0.5809 34 24 ( 2700 1j1n_A) ( 6328 1wdn_A) 0.2054 0.3430 5.4527 ( 2 13 21) 0 0.3784 0.4449 34 20 ( 2700 1j1n_A) ( 6581 3mbp ) 0.7139 0.8319 5.1380 ( 22 225 325) 0 0.7139 0.8494 34 27 ( 2700 1j1n_A) ( 6600 3thi_A) 0.6339 0.8002 5.8351 ( 13 157 231) 0 0.6339 0.8002 34 26 -------------------------------------------------------------------------------------------------------------------------