------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3723 1lst ) ( 82 1a99_A) 0.4991 0.3460 6.3518 ( 1 18 36) 0 0.4991 0.3662 18 26 ( 3723 1lst ) ( 146 1al3 ) 0.4444 0.4210 4.0641 ( 0 11 28) 0 0.6079 0.5849 18 19 ( 3723 1lst ) ( 157 1amf ) 0.7584 0.7023 4.2054 ( 7 71 105) 0 0.7662 0.7023 18 20 ( 3723 1lst ) ( 201 1atg ) 0.4302 0.4302 6.3986 ( 4 21 36) 0 0.6438 0.6438 18 18 ( 3723 1lst ) ( 552 1cb6_A) 0.7676 0.5272 4.4507 ( 7 74 105) 0 0.7676 0.5272 18 28 ( 3723 1lst ) ( 905 1dpe ) 0.2636 0.1464 6.4187 ( 1 4 10) 0 0.3881 0.2724 18 34 ( 3723 1lst ) ( 1204 1elj_A) 0.6282 0.5033 5.3240 ( 9 65 91) 0 0.6282 0.5033 18 26 ( 3723 1lst ) ( 1264 1eu8_A) 0.3257 0.1994 9.0355 ( 1 6 15) 0 0.4915 0.4236 18 30 ( 3723 1lst ) ( 1967 1gv8_A) 0.4906 0.5541 3.5755 ( 5 31 45) 0 0.4906 0.5891 18 14 ( 3723 1lst ) ( 2057 1h3d_A) 0.5229 0.5145 4.6445 ( 9 51 78) 0 0.6366 0.6081 18 19 ( 3723 1lst ) ( 2412 1i6a_A) 0.5499 0.5889 5.6973 ( 7 45 66) 0 0.5499 0.5889 18 15 ( 3723 1lst ) ( 2503 1ii5_A) 0.8864 0.7985 2.8457 ( 3 83 120) 0 0.9382 0.8463 18 20 ( 3723 1lst ) ( 2646 1ixc_A) 0.4414 0.4446 5.7786 ( 12 55 78) 0 0.4999 0.5120 18 17 ( 3723 1lst ) ( 2648 1ixh ) 0.5296 0.4987 4.6594 ( 13 72 105) 0 0.5296 0.4987 18 23 ( 3723 1lst ) ( 2700 1j1n_A) 0.5516 0.3690 6.0219 ( 8 49 78) 0 0.5516 0.3690 18 34 ( 3723 1lst ) ( 2841 1jet_A) 0.4296 0.2846 6.0087 ( 5 24 45) 0 0.4958 0.3675 18 34 ( 3723 1lst ) ( 3723 1lst ) 1.0000 1.0000 0.0000 ( 0 120 153) 0 1.0000 1.0000 18 18 ( 3723 1lst ) ( 4009 1mqi_A) 0.8307 0.7130 2.9921 ( 3 75 105) 0 0.8327 0.7140 18 21 ( 3723 1lst ) ( 4254 1nh8_A) 0.4677 0.4575 3.5341 ( 11 54 78) 0 0.4963 0.4691 18 20 ( 3723 1lst ) ( 4320 1nnf_A) 0.5927 0.4930 6.4692 ( 4 41 55) 0 0.6720 0.5842 18 22 ( 3723 1lst ) ( 4506 1o63_A) 0.3911 0.3868 3.8365 ( 11 44 78) 0 0.5821 0.5321 18 20 ( 3723 1lst ) ( 4939 1p99_A) 0.5636 0.5449 4.3476 ( 9 55 91) 0 0.6048 0.5711 18 20 ( 3723 1lst ) ( 4957 1pb7_A) 0.7179 0.5893 2.8216 ( 3 55 78) 0 0.7688 0.6330 18 22 ( 3723 1lst ) ( 4982 1pda ) 0.5795 0.6326 5.2027 ( 6 43 66) 0 0.5795 0.6657 18 15 ( 3723 1lst ) ( 5070 1pot ) 0.5547 0.4542 6.7575 ( 1 23 45) 0 0.6656 0.5451 18 22 ( 3723 1lst ) ( 5192 1q35_A) 0.6627 0.5661 5.3312 ( 8 64 91) 0 0.6627 0.5793 18 23 ( 3723 1lst ) ( 5599 1r9l_A) 0.6543 0.5626 4.6308 ( 6 52 78) 0 0.6543 0.5722 18 22 ( 3723 1lst ) ( 5730 1ryo_A) 0.6876 0.5383 4.5819 ( 7 61 91) 0 0.6876 0.5383 18 25 ( 3723 1lst ) ( 5788 1sbp ) 0.5875 0.5052 4.4571 ( 13 82 105) 0 0.6102 0.5310 18 26 ( 3723 1lst ) ( 6029 1uiu_A) 0.3642 0.2790 5.9533 ( 6 23 45) 0 0.5789 0.3316 18 33 ( 3723 1lst ) ( 6082 1uqw_A) 0.2777 0.1515 11.3978 ( 0 5 10) 0 0.4126 0.3100 18 33 ( 3723 1lst ) ( 6089 1urs_A) 0.5822 0.4864 5.2879 ( 10 64 91) 0 0.7015 0.5269 18 26 ( 3723 1lst ) ( 6092 1us5_A) 0.7462 0.5753 5.0680 ( 5 60 91) 0 0.7689 0.6074 18 24 ( 3723 1lst ) ( 6328 1wdn_A) 0.8304 0.7483 2.3512 ( 3 73 105) 0 0.8304 0.7483 18 20 ( 3723 1lst ) ( 6581 3mbp ) 0.5331 0.4682 5.4781 ( 12 67 105) 0 0.5331 0.4682 18 27 ( 3723 1lst ) ( 6600 3thi_A) 0.4972 0.4321 4.7923 ( 10 53 78) 0 0.4972 0.4321 18 26 -------------------------------------------------------------------------------------------------------------------------