------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4254 1nh8_A) ( 82 1a99_A) 0.2823 0.2704 7.0295 ( 10 29 45) 0 0.3760 0.3454 20 26 ( 4254 1nh8_A) ( 146 1al3 ) 0.4496 0.4732 4.9784 ( 1 19 36) 0 0.4531 0.4736 20 19 ( 4254 1nh8_A) ( 157 1amf ) 0.4415 0.4415 5.1453 ( 2 17 36) 0 0.4884 0.4884 20 20 ( 4254 1nh8_A) ( 201 1atg ) 0.4102 0.4389 5.1740 ( 4 22 36) 0 0.5388 0.5926 20 18 ( 4254 1nh8_A) ( 552 1cb6_A) 0.3000 0.2143 3.6279 ( 0 10 15) 0 0.4759 0.4099 20 28 ( 4254 1nh8_A) ( 905 1dpe ) 0.2266 0.1450 8.2227 ( 3 9 10) 0 0.3118 0.2375 20 34 ( 4254 1nh8_A) ( 1204 1elj_A) 0.3000 0.2308 3.6280 ( 0 8 15) 0 0.5774 0.4765 20 26 ( 4254 1nh8_A) ( 1264 1eu8_A) 0.4200 0.2955 6.6430 ( 3 18 36) 0 0.4562 0.4084 20 30 ( 4254 1nh8_A) ( 1967 1gv8_A) 0.4469 0.6253 2.9234 ( 2 22 36) 0 0.4469 0.6253 20 14 ( 4254 1nh8_A) ( 2057 1h3d_A) 0.9429 0.9908 2.6834 ( 6 137 171) 0 0.9429 0.9908 20 19 ( 4254 1nh8_A) ( 2412 1i6a_A) 0.4656 0.5575 5.7190 ( 5 33 45) 0 0.4656 0.5575 20 15 ( 4254 1nh8_A) ( 2503 1ii5_A) 0.5785 0.5785 4.2230 ( 11 71 105) 0 0.5785 0.5785 20 20 ( 4254 1nh8_A) ( 2646 1ixc_A) 0.4958 0.5789 4.9583 ( 3 35 45) 0 0.4958 0.5789 20 17 ( 4254 1nh8_A) ( 2648 1ixh ) 0.3997 0.3477 5.2508 ( 1 17 28) 0 0.5454 0.4919 20 23 ( 4254 1nh8_A) ( 2700 1j1n_A) 0.2500 0.1471 3.7075 ( 0 7 10) 0 0.5366 0.3225 20 34 ( 4254 1nh8_A) ( 2841 1jet_A) 0.4204 0.2859 5.9224 ( 5 25 45) 0 0.6339 0.3812 20 34 ( 4254 1nh8_A) ( 3723 1lst ) 0.4575 0.4677 3.5341 ( 11 54 78) 0 0.4691 0.4963 20 18 ( 4254 1nh8_A) ( 4009 1mqi_A) 0.4073 0.4054 4.2564 ( 18 75 105) 0 0.4779 0.4737 20 21 ( 4254 1nh8_A) ( 4254 1nh8_A) 1.0000 1.0000 0.0000 ( 0 161 190) 0 1.0000 1.0000 20 20 ( 4254 1nh8_A) ( 4320 1nnf_A) 0.4530 0.4232 6.5415 ( 5 30 45) 0 0.5431 0.4957 20 22 ( 4254 1nh8_A) ( 4506 1o63_A) 0.8792 0.8792 3.4244 ( 7 113 153) 0 0.8792 0.8792 20 20 ( 4254 1nh8_A) ( 4939 1p99_A) 0.5326 0.5326 4.9009 ( 10 59 91) 0 0.5384 0.5384 20 20 ( 4254 1nh8_A) ( 4957 1pb7_A) 0.4122 0.4048 4.3405 ( 13 56 78) 0 0.4509 0.4395 20 22 ( 4254 1nh8_A) ( 4982 1pda ) 0.3962 0.5180 2.8755 ( 2 18 28) 0 0.6120 0.6952 20 15 ( 4254 1nh8_A) ( 5070 1pot ) 0.4495 0.4088 4.0764 ( 1 18 36) 0 0.4932 0.4619 20 22 ( 4254 1nh8_A) ( 5192 1q35_A) 0.3966 0.3613 7.1608 ( 4 20 36) 0 0.4972 0.4334 20 23 ( 4254 1nh8_A) ( 5599 1r9l_A) 0.5885 0.5586 4.3904 ( 10 70 91) 0 0.5993 0.5739 20 22 ( 4254 1nh8_A) ( 5730 1ryo_A) 0.4959 0.4195 4.7396 ( 6 39 55) 0 0.4995 0.4489 20 25 ( 4254 1nh8_A) ( 5788 1sbp ) 0.4497 0.3461 5.3370 ( 1 20 36) 0 0.5828 0.4855 20 26 ( 4254 1nh8_A) ( 6029 1uiu_A) 0.4473 0.2725 5.9216 ( 2 23 36) 0 0.4473 0.3485 20 33 ( 4254 1nh8_A) ( 6082 1uqw_A) 0.3009 0.2066 8.1612 ( 3 11 21) 0 0.4525 0.3417 20 33 ( 4254 1nh8_A) ( 6089 1urs_A) 0.2481 0.1918 5.8687 ( 1 6 10) 0 0.6444 0.5214 20 26 ( 4254 1nh8_A) ( 6092 1us5_A) 0.5569 0.4810 6.3450 ( 6 47 66) 0 0.5569 0.4810 20 24 ( 4254 1nh8_A) ( 6328 1wdn_A) 0.4016 0.4016 4.2289 ( 15 62 91) 0 0.4981 0.4981 20 20 ( 4254 1nh8_A) ( 6581 3mbp ) 0.2500 0.1852 3.3635 ( 0 7 10) 0 0.3867 0.3095 20 27 ( 4254 1nh8_A) ( 6600 3thi_A) 0.4408 0.3436 6.6575 ( 3 25 36) 0 0.7138 0.5877 20 26 -------------------------------------------------------------------------------------------------------------------------