------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6082 1uqw_A) ( 82 1a99_A) 0.1818 0.2307 10.1773 ( 0 8 15) 0 0.3021 0.3453 33 26 ( 6082 1uqw_A) ( 146 1al3 ) 0.3315 0.5528 6.9964 ( 3 26 55) 0 0.3315 0.5528 33 19 ( 6082 1uqw_A) ( 157 1amf ) 0.1515 0.2500 4.6764 ( 0 5 10) 0 0.3285 0.5015 33 20 ( 6082 1uqw_A) ( 201 1atg ) 0.1491 0.2420 4.5998 ( 2 6 10) 0 0.3170 0.4464 33 18 ( 6082 1uqw_A) ( 552 1cb6_A) 0.2730 0.3003 7.8915 ( 7 25 45) 0 0.3570 0.3938 33 28 ( 6082 1uqw_A) ( 905 1dpe ) 0.9216 0.9016 4.0710 ( 32 407 528) 0 0.9216 0.9016 33 34 ( 6082 1uqw_A) ( 1204 1elj_A) 0.1813 0.2290 5.3369 ( 2 11 15) 0 0.2614 0.2901 33 26 ( 6082 1uqw_A) ( 1264 1eu8_A) 0.1813 0.1991 5.7599 ( 2 11 15) 0 0.3161 0.3243 33 30 ( 6082 1uqw_A) ( 1967 1gv8_A) 0.1816 0.4146 7.5731 ( 1 7 15) 0 0.2571 0.5681 33 14 ( 6082 1uqw_A) ( 2057 1h3d_A) 0.2451 0.2763 7.4202 ( 11 31 45) 0 0.2959 0.4479 33 19 ( 6082 1uqw_A) ( 2412 1i6a_A) 0.1502 0.2869 5.6092 ( 2 7 10) 0 0.2744 0.4051 33 15 ( 6082 1uqw_A) ( 2503 1ii5_A) 0.1515 0.2500 5.8060 ( 0 5 10) 0 0.3026 0.4946 33 20 ( 6082 1uqw_A) ( 2646 1ixc_A) 0.2092 0.3547 6.2423 ( 3 13 21) 0 0.2849 0.4110 33 17 ( 6082 1uqw_A) ( 2648 1ixh ) 0.1515 0.2174 8.1766 ( 0 7 10) 0 0.3435 0.4341 33 23 ( 6082 1uqw_A) ( 2700 1j1n_A) 0.1212 0.1176 5.1165 ( 0 5 6) 0 0.2976 0.2935 33 34 ( 6082 1uqw_A) ( 2841 1jet_A) 0.5315 0.5289 5.2882 ( 46 255 378) 0 0.5315 0.5289 33 34 ( 6082 1uqw_A) ( 3723 1lst ) 0.1690 0.1729 8.7224 ( 15 26 45) 0 0.3100 0.4126 33 18 ( 6082 1uqw_A) ( 4009 1mqi_A) 0.1514 0.2366 9.5470 ( 1 6 10) 0 0.3131 0.4071 33 21 ( 6082 1uqw_A) ( 4254 1nh8_A) 0.2066 0.3009 8.1612 ( 3 11 21) 0 0.3417 0.4525 33 20 ( 6082 1uqw_A) ( 4320 1nnf_A) 0.1478 0.2044 9.9150 ( 3 8 10) 0 0.3418 0.4371 33 22 ( 6082 1uqw_A) ( 4506 1o63_A) 0.2267 0.2590 7.4253 ( 9 24 36) 0 0.3892 0.5352 33 20 ( 6082 1uqw_A) ( 4939 1p99_A) 0.1212 0.2000 6.3220 ( 0 5 6) 0 0.3773 0.5429 33 20 ( 6082 1uqw_A) ( 4957 1pb7_A) 0.1976 0.2204 9.2108 ( 7 16 28) 0 0.2865 0.3919 33 22 ( 6082 1uqw_A) ( 4982 1pda ) 0.2427 0.2625 7.2473 ( 11 29 55) 0 0.2642 0.4198 33 15 ( 6082 1uqw_A) ( 5070 1pot ) 0.1515 0.2273 3.8140 ( 0 6 10) 0 0.2931 0.3287 33 22 ( 6082 1uqw_A) ( 5192 1q35_A) 0.1212 0.1739 4.6805 ( 0 4 6) 0 0.2641 0.3043 33 23 ( 6082 1uqw_A) ( 5599 1r9l_A) 0.1818 0.2723 8.3545 ( 1 10 15) 0 0.3326 0.4944 33 22 ( 6082 1uqw_A) ( 5730 1ryo_A) 0.1786 0.2283 9.0037 ( 2 7 15) 0 0.2725 0.3157 33 25 ( 6082 1uqw_A) ( 5788 1sbp ) 0.1212 0.1538 7.3896 ( 0 5 6) 0 0.2889 0.3213 33 26 ( 6082 1uqw_A) ( 6029 1uiu_A) 0.5454 0.5454 2.2028 ( 3 119 153) 0 0.5454 0.5454 33 33 ( 6082 1uqw_A) ( 6082 1uqw_A) 1.0000 1.0000 0.0000 ( 0 423 528) 0 1.0000 1.0000 33 33 ( 6082 1uqw_A) ( 6089 1urs_A) 0.1818 0.2308 7.8337 ( 0 9 15) 0 0.3145 0.3379 33 26 ( 6082 1uqw_A) ( 6092 1us5_A) 0.1818 0.2500 6.8119 ( 0 11 15) 0 0.3522 0.4529 33 24 ( 6082 1uqw_A) ( 6328 1wdn_A) 0.1817 0.2985 7.1979 ( 1 8 15) 0 0.3587 0.4848 33 20 ( 6082 1uqw_A) ( 6581 3mbp ) 0.1818 0.2221 5.9236 ( 1 11 15) 0 0.3129 0.3425 33 27 ( 6082 1uqw_A) ( 6600 3thi_A) 0.1818 0.2308 7.9812 ( 0 10 15) 0 0.2773 0.3192 33 26 -------------------------------------------------------------------------------------------------------------------------