------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6089 1urs_A) ( 82 1a99_A) 0.6078 0.6078 5.2119 ( 19 136 171) 0 0.6078 0.6078 26 26 ( 6089 1urs_A) ( 146 1al3 ) 0.2013 0.2301 8.3136 ( 2 5 15) 0 0.3453 0.3799 26 19 ( 6089 1urs_A) ( 157 1amf ) 0.5671 0.6184 4.5584 ( 17 112 153) 0 0.5671 0.6456 26 20 ( 6089 1urs_A) ( 201 1atg ) 0.5042 0.5608 4.9245 ( 14 82 120) 0 0.5042 0.5608 26 18 ( 6089 1urs_A) ( 552 1cb6_A) 0.2306 0.2142 6.5103 ( 1 10 15) 0 0.3715 0.3499 26 28 ( 6089 1urs_A) ( 905 1dpe ) 0.2554 0.2171 9.1864 ( 6 18 28) 0 0.4183 0.3838 26 34 ( 6089 1urs_A) ( 1204 1elj_A) 0.8195 0.8195 2.6576 ( 13 181 231) 0 0.8195 0.8195 26 26 ( 6089 1urs_A) ( 1264 1eu8_A) 0.7759 0.7151 3.4929 ( 22 203 276) 0 0.7759 0.7151 26 30 ( 6089 1urs_A) ( 1967 1gv8_A) 0.2955 0.4307 6.4488 ( 4 19 28) 0 0.3260 0.4485 26 14 ( 6089 1urs_A) ( 2057 1h3d_A) 0.3323 0.4196 6.8805 ( 3 16 36) 0 0.5204 0.6643 26 19 ( 6089 1urs_A) ( 2412 1i6a_A) 0.4575 0.7465 4.5026 ( 3 32 66) 0 0.4575 0.7465 26 15 ( 6089 1urs_A) ( 2503 1ii5_A) 0.4822 0.5173 5.0169 ( 14 76 120) 0 0.4822 0.5249 26 20 ( 6089 1urs_A) ( 2646 1ixc_A) 0.4719 0.6127 4.8623 ( 7 49 78) 0 0.4719 0.6127 26 17 ( 6089 1urs_A) ( 2648 1ixh ) 0.5042 0.5289 4.9625 ( 14 82 120) 1 0.5613 0.5894 26 23 ( 6089 1urs_A) ( 2700 1j1n_A) 0.7101 0.6132 5.8443 ( 22 179 253) 0 0.7275 0.6213 26 34 ( 6089 1urs_A) ( 2841 1jet_A) 0.1923 0.1471 3.2937 ( 0 5 10) 0 0.3386 0.2627 26 34 ( 6089 1urs_A) ( 3723 1lst ) 0.4864 0.5822 5.2879 ( 10 64 91) 0 0.5269 0.7015 26 18 ( 6089 1urs_A) ( 4009 1mqi_A) 0.5170 0.5804 4.6660 ( 10 67 105) 0 0.5170 0.5804 26 21 ( 6089 1urs_A) ( 4254 1nh8_A) 0.1923 0.2500 3.4506 ( 0 7 10) 0 0.5214 0.6444 26 20 ( 6089 1urs_A) ( 4320 1nnf_A) 0.6336 0.7035 4.9926 ( 12 103 153) 0 0.6336 0.7035 26 22 ( 6089 1urs_A) ( 4506 1o63_A) 0.4141 0.5196 5.6764 ( 4 31 55) 0 0.4712 0.5640 26 20 ( 6089 1urs_A) ( 4939 1p99_A) 0.4889 0.5655 4.9657 ( 8 52 91) 0 0.4889 0.5994 26 20 ( 6089 1urs_A) ( 4957 1pb7_A) 0.5415 0.6099 6.0138 ( 9 71 105) 0 0.5415 0.6099 26 22 ( 6089 1urs_A) ( 4982 1pda ) 0.1913 0.3186 8.8306 ( 1 5 10) 0 0.3833 0.6475 26 15 ( 6089 1urs_A) ( 5070 1pot ) 0.5960 0.6604 5.3116 ( 13 104 136) 0 0.5960 0.6604 26 22 ( 6089 1urs_A) ( 5192 1q35_A) 0.6922 0.7449 5.9265 ( 15 136 190) 0 0.6922 0.7449 26 23 ( 6089 1urs_A) ( 5599 1r9l_A) 0.4795 0.5477 6.0438 ( 6 46 78) 0 0.4795 0.5477 26 22 ( 6089 1urs_A) ( 5730 1ryo_A) 0.2304 0.2395 5.4815 ( 1 8 15) 0 0.4530 0.4648 26 25 ( 6089 1urs_A) ( 5788 1sbp ) 0.6231 0.6231 4.1022 ( 14 114 153) 0 0.6231 0.6231 26 26 ( 6089 1urs_A) ( 6029 1uiu_A) 0.2076 0.1933 8.2237 ( 5 11 28) 0 0.4903 0.4331 26 33 ( 6089 1urs_A) ( 6082 1uqw_A) 0.2308 0.1818 7.8337 ( 0 9 15) 0 0.3379 0.3145 26 33 ( 6089 1urs_A) ( 6089 1urs_A) 1.0000 1.0000 0.0000 ( 0 267 325) 0 1.0000 1.0000 26 26 ( 6089 1urs_A) ( 6092 1us5_A) 0.3892 0.3996 4.9782 ( 11 48 78) 1 0.4430 0.4581 26 24 ( 6089 1urs_A) ( 6328 1wdn_A) 0.1923 0.2500 5.8448 ( 0 5 10) 0 0.4974 0.6405 26 20 ( 6089 1urs_A) ( 6581 3mbp ) 0.8994 0.8691 2.7896 ( 13 209 276) 0 0.8994 0.8691 26 27 ( 6089 1urs_A) ( 6600 3thi_A) 0.7302 0.7302 3.6602 ( 16 154 210) 0 0.7302 0.7302 26 26 -------------------------------------------------------------------------------------------------------------------------