------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6581 3mbp ) ( 82 1a99_A) 0.4587 0.4692 6.0024 ( 11 64 91) 0 0.5677 0.5725 27 26 ( 6581 3mbp ) ( 146 1al3 ) 0.1852 0.2632 5.4737 ( 0 8 10) 0 0.3314 0.3720 27 19 ( 6581 3mbp ) ( 157 1amf ) 0.5231 0.5650 4.4597 ( 19 112 153) 0 0.5231 0.6094 27 20 ( 6581 3mbp ) ( 201 1atg ) 0.5342 0.6451 4.7931 ( 12 84 120) 0 0.5342 0.6451 27 18 ( 6581 3mbp ) ( 552 1cb6_A) 0.3701 0.3679 5.9053 ( 21 81 120) 1 0.3701 0.3679 27 28 ( 6581 3mbp ) ( 905 1dpe ) 0.2373 0.2186 7.9658 ( 9 23 36) 0 0.5063 0.4078 27 34 ( 6581 3mbp ) ( 1204 1elj_A) 0.8565 0.8846 2.5211 ( 15 211 276) 0 0.8565 0.8846 27 26 ( 6581 3mbp ) ( 1264 1eu8_A) 0.7332 0.6996 2.7405 ( 26 216 300) 0 0.7332 0.6996 27 30 ( 6581 3mbp ) ( 1967 1gv8_A) 0.2591 0.4947 5.4741 ( 1 11 21) 0 0.3245 0.5076 27 14 ( 6581 3mbp ) ( 2057 1h3d_A) 0.3327 0.4702 5.7912 ( 2 23 36) 0 0.4081 0.5069 27 19 ( 6581 3mbp ) ( 2412 1i6a_A) 0.4323 0.6545 5.2499 ( 5 38 66) 0 0.4323 0.6545 27 15 ( 6581 3mbp ) ( 2503 1ii5_A) 0.5538 0.7422 4.8042 ( 4 67 105) 0 0.5538 0.7422 27 20 ( 6581 3mbp ) ( 2646 1ixc_A) 0.4545 0.5993 5.3879 ( 8 54 78) 0 0.4545 0.6425 27 17 ( 6581 3mbp ) ( 2648 1ixh ) 0.1852 0.2174 5.7747 ( 0 7 10) 0 0.4968 0.5168 27 23 ( 6581 3mbp ) ( 2700 1j1n_A) 0.8494 0.7079 5.1403 ( 18 209 300) 0 0.8494 0.7139 27 34 ( 6581 3mbp ) ( 2841 1jet_A) 0.1669 0.1576 8.6181 ( 8 14 21) 1 0.3819 0.3396 27 34 ( 6581 3mbp ) ( 3723 1lst ) 0.4682 0.5331 5.4781 ( 12 67 105) 0 0.4682 0.5331 27 18 ( 6581 3mbp ) ( 4009 1mqi_A) 0.2507 0.2765 6.5069 ( 6 18 28) 0 0.4000 0.4620 27 21 ( 6581 3mbp ) ( 4254 1nh8_A) 0.1852 0.2500 3.3635 ( 0 7 10) 0 0.3095 0.3867 27 20 ( 6581 3mbp ) ( 4320 1nnf_A) 0.6975 0.8467 4.4568 ( 7 114 171) 0 0.6975 0.8467 27 22 ( 6581 3mbp ) ( 4506 1o63_A) 0.3315 0.3523 4.7892 ( 11 40 66) 0 0.4445 0.5474 27 20 ( 6581 3mbp ) ( 4939 1p99_A) 0.3471 0.3743 4.5884 ( 10 39 66) 0 0.4577 0.5758 27 20 ( 6581 3mbp ) ( 4957 1pb7_A) 0.2222 0.2725 7.3494 ( 1 12 15) 0 0.4836 0.5328 27 22 ( 6581 3mbp ) ( 4982 1pda ) 0.1852 0.3333 5.6442 ( 0 1 10) 0 0.3578 0.4666 27 15 ( 6581 3mbp ) ( 5070 1pot ) 0.5258 0.5589 5.1297 ( 18 107 153) 0 0.5258 0.5589 27 22 ( 6581 3mbp ) ( 5192 1q35_A) 0.6612 0.7419 4.8769 ( 12 116 171) 0 0.6664 0.7431 27 23 ( 6581 3mbp ) ( 5599 1r9l_A) 0.4561 0.5297 5.9915 ( 8 55 78) 0 0.4561 0.5297 27 22 ( 6581 3mbp ) ( 5730 1ryo_A) 0.1817 0.1950 4.9006 ( 2 7 10) 0 0.3707 0.3775 27 25 ( 6581 3mbp ) ( 5788 1sbp ) 0.5914 0.6050 4.7329 ( 15 113 153) 0 0.5914 0.6050 27 26 ( 6581 3mbp ) ( 6029 1uiu_A) 0.5272 0.4434 4.8670 ( 9 72 105) 1 0.5272 0.4434 27 33 ( 6581 3mbp ) ( 6082 1uqw_A) 0.2221 0.1818 5.9236 ( 1 11 15) 0 0.3425 0.3129 27 33 ( 6581 3mbp ) ( 6089 1urs_A) 0.8691 0.8994 2.7896 ( 13 209 276) 0 0.8691 0.8994 27 26 ( 6581 3mbp ) ( 6092 1us5_A) 0.3921 0.4322 6.5575 ( 5 32 55) 0 0.5058 0.5611 27 24 ( 6581 3mbp ) ( 6328 1wdn_A) 0.1852 0.2500 5.1993 ( 0 7 10) 0 0.4725 0.5295 27 20 ( 6581 3mbp ) ( 6581 3mbp ) 1.0000 1.0000 0.0000 ( 0 277 351) 0 1.0000 1.0000 27 27 ( 6581 3mbp ) ( 6600 3thi_A) 0.7421 0.7612 4.0306 ( 17 169 231) 0 0.7421 0.7612 27 26 -------------------------------------------------------------------------------------------------------------------------