------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1, 1]: Comparing 12as_A and 12as_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (18 . 18) (19 . 19) (20 . 20) (22 . 22)) 0.000 {0/144:171} B:0 2.94648 [ 2.94648] ((7 . 7) (8 . 8) (9 . 9) (14 . 14) (15 . 15) (16 . 18) (19 . 19)) 5.088 {3/14:21} B:0 2.94648 [ 2.94648] ((7 . 7) (8 . 8) (9 . 9) (14 . 14) (15 . 15) (18 . 16) (19 . 19)) 5.088 {3/14:21} B:0 3.17050 [ 3.17050] ((1 . 1) (6 . 6) (9 . 9) (12 . 11) (13 . 13) (19 . 19)) 4.307 {1/12:15} B:0 3.17050 [ 3.17050] ((1 . 1) (6 . 6) (9 . 9) (11 . 12) (13 . 13) (19 . 19)) 4.307 {1/12:15} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1, 202]: Comparing 12as_A and 1ati_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 41 (18 H + 23 S) secondary structure elements in 1ati_A, of which 25 satisfy the size requirements. 1.46290 [ 1.92368] ((1 . 5) (2 . 6) (3 . 7) (5 . 14) (6 . 15) (7 . 17) (8 . 19) (9 . 20) (13 . 22) (14 . 23) (15 . 24) (19 . 28) (20 . 29)) 3.347 {2/57:78} B:0 1.55216 [ 1.96530] ((1 . 5) (2 . 6) (3 . 7) (5 . 11) (6 . 15) (7 . 17) (8 . 19) (9 . 20) (13 . 22) (14 . 23) (15 . 24) (19 . 28) (20 . 29)) 5.462 {6/57:78} B:0 2.69218 [ 2.80204] ((1 . 5) (2 . 6) (3 . 7) (5 . 14) (6 . 16) (7 . 17) (8 . 19) (9 . 20) (10 . 22) (13 . 23) (14 . 24) (19 . 28) (20 . 29)) 4.996 {15/57:78} B:0 3.16674 [ 4.16670] ((1 . 5) (2 . 6) (3 . 7) (6 . 15) (9 . 20) (10 . 22)) 4.892 {0/12:15} B:0 3.80013 [ 5.00006] ((1 . 5) (6 . 15) (9 . 20) (10 . 22) (13 . 24)) 6.580 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.6836 [and 1/min{score2}: 0.5198] [1, 316]: Comparing 12as_A and 1b8a_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 35 (15 H + 20 S) secondary structure elements in 1b8a_A, of which 19 satisfy the size requirements. 1.22776 [ 1.22776] ((1 . 12) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (9 . 20) (10 . 22) (11 . 23) (12 . 24) (13 . 25) (14 . 29) (15 . 30) (16 . 31) (18 . 32) (19 . 33) (20 . 34)) 2.867 {7/96:120} B:0 1.55144 [ 1.55144] ((1 . 12) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (9 . 20) (12 . 24) (13 . 25) (14 . 29) (15 . 30) (18 . 31) (19 . 33) (20 . 34)) 3.706 {6/57:78} B:0 3.96669 [ 3.96669] ((6 . 17) (9 . 20) (15 . 29) (19 . 33) (20 . 34)) 3.603 {2/8:10} B:0 4.75013 [ 4.75013] ((1 . 17) (10 . 25) (13 . 30) (14 . 33)) 7.790 {0/5:6} B:0 4.75014 [ 4.75014] ((9 . 12) (12 . 17) (13 . 18) (18 . 23)) 7.977 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8145 [and 1/min{score2}: 0.8145] [1, 397]: Comparing 12as_A and 1bia, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 23 (9 H + 14 S) secondary structure elements in 1bia, of which 12 satisfy the size requirements. 2.78583 [ 2.40538] ((9 . 6) (10 . 7) (12 . 8) (13 . 10) (14 . 11) (15 . 16) (20 . 17) (22 . 18)) 7.695 {3/13:28} B:0 3.80028 [ 2.40112] ((6 . 8) (7 . 10) (8 . 11) (9 . 12) (10 . 15)) 7.986 {0/8:10} B:0 3.83526 [ 2.53082] ((6 . 8) (7 . 10) (8 . 11) (9 . 12) (10 . 16)) 9.624 {1/6:10} B:0 4.48962 [ 3.89836] ((6 . 8) (7 . 10) (8 . 11) (9 . 12) (10 . 14)) 6.339 {3/8:10} B:0 4.75002 [ 3.00008] ((10 . 7) (12 . 8) (13 . 10) (20 . 17)) 4.888 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5782 [and 1/min{score2}: 0.9089] [1, 1003]: Comparing 12as_A and 1e1o_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 39 (18 H + 21 S) secondary structure elements in 1e1o_A, of which 23 satisfy the size requirements. 1.27884 [ 1.49206] ((1 . 15) (5 . 19) (6 . 20) (7 . 21) (8 . 22) (9 . 23) (10 . 26) (11 . 27) (12 . 30) (13 . 31) (14 . 33) (15 . 34) (16 . 35) (18 . 36) (19 . 37) (20 . 38)) 3.759 {8/88:120} B:0 1.28734 [ 1.54514] ((1 . 15) (5 . 19) (6 . 20) (7 . 21) (8 . 22) (9 . 23) (10 . 26) (11 . 27) (12 . 30) (13 . 31) (14 . 33) (15 . 34) (16 . 35) (19 . 37) (20 . 38)) 3.849 {5/78:105} B:0 3.80002 [ 4.60001] ((6 . 20) (7 . 21) (8 . 22) (9 . 23) (12 . 27)) 4.256 {0/7:10} B:0 3.80017 [ 4.60010] ((2 . 26) (6 . 30) (7 . 31) (8 . 33) (11 . 36)) 7.057 {0/5:10} B:0 3.80027 [ 4.60015] ((1 . 23) (6 . 30) (7 . 31) (8 . 33) (11 . 36)) 7.871 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7820 [and 1/min{score2}: 0.6702] [1, 1229]: Comparing 12as_A and 1eov_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 36 (17 H + 19 S) secondary structure elements in 1eov_A, of which 21 satisfy the size requirements. 1.19999 [ 1.32180] ((1 . 15) (5 . 19) (6 . 20) (7 . 21) (8 . 22) (9 . 23) (10 . 25) (11 . 26) (12 . 27) (13 . 28) (14 . 30) (15 . 31) (16 . 32) (18 . 33) (19 . 34) (20 . 35)) 3.102 {5/93:120} B:0 3.16667 [ 3.50001] ((6 . 20) (7 . 21) (8 . 22) (9 . 23) (13 . 25) (19 . 34)) 2.741 {0/10:15} B:0 3.17209 [ 3.50402] ((6 . 20) (7 . 21) (8 . 22) (9 . 23) (12 . 26) (19 . 34)) 4.696 {1/11:15} B:0 3.80033 [ 4.20024] ((9 . 15) (12 . 20) (13 . 21) (14 . 22) (18 . 26)) 8.282 {0/4:10} B:0 3.80036 [ 4.20026] ((1 . 23) (6 . 27) (7 . 28) (8 . 30) (11 . 33)) 8.462 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.7565] [1, 1733]: Comparing 12as_A and 1g5h_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 37 (17 H + 20 S) secondary structure elements in 1g5h_A, of which 20 satisfy the size requirements. 1.72766 [ 1.81851] ((1 . 4) (2 . 5) (6 . 11) (7 . 12) (8 . 14) (9 . 15) (13 . 17) (14 . 18) (15 . 19) (19 . 24) (20 . 25)) 3.918 {1/39:55} B:0 1.90099 [ 2.00085] ((1 . 4) (2 . 12) (7 . 13) (8 . 14) (9 . 15) (13 . 17) (14 . 18) (15 . 19) (19 . 24) (20 . 25)) 5.185 {1/28:45} B:0 2.71444 [ 2.85728] ((1 . 4) (2 . 5) (6 . 11) (8 . 14) (9 . 15) (10 . 17) (13 . 19)) 5.351 {0/18:21} B:0 3.16685 [ 3.33349] ((1 . 4) (2 . 5) (9 . 15) (10 . 17) (13 . 19) (14 . 24)) 6.276 {0/10:15} B:0 3.73558 [ 3.75709] ((7 . 5) (8 . 12) (9 . 15) (13 . 17) (14 . 18) (15 . 19) (18 . 20) (19 . 24) (20 . 25)) 5.682 {8/22:36} B:0 SIMILARITY (1/min{score1}): 0.5788 [and 1/min{score2}: 0.5499] [1, 2081]: Comparing 12as_A and 1h4v_B, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 33 (17 H + 16 S) secondary structure elements in 1h4v_B, of which 20 satisfy the size requirements. 1.46398 [ 1.54056] ((1 . 1) (3 . 3) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 16) (15 . 21) (19 . 23) (20 . 24)) 5.998 {2/62:78} B:0 2.37504 [ 2.50003] ((1 . 1) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (19 . 23) (20 . 24)) 3.374 {0/21:28} B:0 2.86061 [ 2.87577] ((1 . 1) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 15) (13 . 20) (14 . 21) (19 . 23) (20 . 24)) 6.378 {12/43:66} B:0 3.80016 [ 4.00013] ((1 . 1) (6 . 7) (12 . 16) (14 . 20) (15 . 21)) 6.879 {0/9:10} B:0 3.80018 [ 4.00015] ((1 . 1) (6 . 7) (9 . 11) (10 . 12) (15 . 19)) 7.137 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.7344 [and 1/min{score2}: 0.6981] [1, 2166]: Comparing 12as_A and 1hc7_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 37 (14 H + 23 S) secondary structure elements in 1hc7_A, of which 20 satisfy the size requirements. 1.59820 [ 1.67945] ((1 . 5) (3 . 7) (5 . 9) (6 . 10) (7 . 12) (8 . 13) (9 . 14) (10 . 15) (14 . 16) (15 . 17) (19 . 21) (20 . 22)) 3.582 {3/43:66} B:0 1.59959 [ 1.68065] ((1 . 5) (3 . 7) (5 . 9) (6 . 10) (7 . 12) (8 . 13) (9 . 14) (13 . 15) (14 . 16) (15 . 17) (19 . 21) (20 . 22)) 3.311 {3/42:66} B:0 2.13281 [ 2.24088] ((1 . 5) (2 . 12) (8 . 13) (9 . 14) (13 . 15) (14 . 16) (15 . 17) (19 . 21) (20 . 22)) 4.582 {2/21:36} B:0 2.28732 [ 2.31666] ((1 . 5) (3 . 7) (5 . 8) (6 . 10) (7 . 12) (8 . 13) (9 . 14) (13 . 15) (14 . 16) (15 . 17) (19 . 21) (20 . 22)) 3.599 {9/42:66} B:0 2.41693 [ 2.46785] ((1 . 5) (7 . 12) (8 . 13) (9 . 14) (13 . 15) (14 . 16) (15 . 17) (16 . 18) (19 . 21) (20 . 22)) 4.527 {6/28:45} B:0 SIMILARITY (1/min{score1}): 0.6257 [and 1/min{score2}: 0.5954] [1, 2741]: Comparing 12as_A and 1j5w_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 22 (11 H + 11 S) secondary structure elements in 1j5w_A, of which 16 satisfy the size requirements. 1.88530 [ 1.69265] ((1 . 1) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (13 . 8) (14 . 12) (15 . 13) (19 . 14) (20 . 15) (22 . 19)) 5.221 {5/36:55} B:0 2.37507 [ 2.00012] ((1 . 1) (7 . 5) (8 . 6) (9 . 7) (13 . 8) (14 . 12) (15 . 13) (19 . 14)) 3.966 {0/17:28} B:0 3.52523 [ 3.48766] ((1 . 1) (7 . 5) (8 . 6) (9 . 7) (10 . 8) (13 . 12) (14 . 13) (19 . 14) (20 . 15) (22 . 19)) 5.825 {10/29:45} B:0 3.80035 [ 3.20059] ((7 . 5) (8 . 6) (9 . 7) (10 . 13) (16 . 21)) 8.441 {0/8:10} B:0 4.75005 [ 4.00008] ((9 . 1) (13 . 5) (14 . 6) (19 . 13)) 5.974 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5304 [and 1/min{score2}: 0.5908] [1, 2925]: Comparing 12as_A and 1jjc_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 22 (10 H + 12 S) secondary structure elements in 1jjc_A, of which 17 satisfy the size requirements. 1.56390 [ 1.44363] ((1 . 1) (3 . 3) (5 . 9) (6 . 10) (7 . 11) (8 . 12) (9 . 13) (13 . 14) (14 . 15) (15 . 17) (18 . 18) (19 . 19) (20 . 20)) 3.650 {6/55:78} B:0 1.58354 [ 1.41696] ((1 . 1) (3 . 3) (5 . 9) (6 . 10) (7 . 11) (8 . 12) (9 . 13) (13 . 14) (14 . 15) (15 . 17) (19 . 19) (20 . 20)) 2.887 {1/46:66} B:0 1.73151 [ 1.55136] ((1 . 1) (3 . 9) (6 . 10) (7 . 11) (8 . 12) (9 . 13) (13 . 14) (14 . 15) (15 . 17) (19 . 19) (20 . 20)) 3.514 {2/37:55} B:0 2.78421 [ 2.75769] ((1 . 1) (3 . 3) (5 . 9) (6 . 10) (7 . 11) (8 . 12) (9 . 13) (10 . 14) (13 . 15) (14 . 17) (19 . 19) (20 . 20)) 3.726 {13/48:66} B:0 3.16690 [ 2.83366] ((1 . 1) (3 . 3) (9 . 13) (10 . 14) (13 . 17) (14 . 19)) 6.622 {0/9:15} B:0 SIMILARITY (1/min{score1}): 0.6394 [and 1/min{score2}: 0.7057] [1, 2930]: Comparing 12as_A and 1jjc_B, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 66 (25 H + 41 S) secondary structure elements in 1jjc_B, of which 12 satisfy the size requirements. 2.11117 [ 1.33358] ((1 . 44) (6 . 51) (7 . 52) (8 . 53) (9 . 54) (13 . 55) (14 . 57) (15 . 58) (19 . 60)) 3.533 {0/22:36} B:0 2.91708 [ 2.73198] ((1 . 44) (6 . 51) (7 . 52) (8 . 53) (9 . 54) (10 . 55) (13 . 57) (15 . 58) (19 . 60)) 4.374 {7/26:36} B:0 3.16669 [ 2.00010] ((1 . 44) (6 . 51) (7 . 52) (8 . 53) (9 . 54) (10 . 55)) 3.850 {0/12:15} B:0 3.16672 [ 2.00021] ((1 . 44) (6 . 51) (7 . 52) (8 . 53) (9 . 54) (13 . 58)) 4.581 {0/9:15} B:0 3.16682 [ 2.00061] ((1 . 44) (6 . 51) (7 . 52) (8 . 53) (9 . 54) (10 . 58)) 5.971 {0/9:15} B:0 SIMILARITY (1/min{score1}): 0.4737 [and 1/min{score2}: 0.7499] [1, 3510]: Comparing 12as_A and 1l0w_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 48 (24 H + 24 S) secondary structure elements in 1l0w_A, of which 22 satisfy the size requirements. 1.42959 [ 1.57986] ((1 . 14) (5 . 17) (6 . 18) (7 . 19) (8 . 20) (9 . 21) (10 . 22) (11 . 23) (13 . 35) (14 . 38) (15 . 39) (16 . 40) (18 . 42) (19 . 43) (20 . 44)) 2.682 {9/80:105} B:0 1.59162 [ 1.83869] ((1 . 14) (2 . 19) (8 . 20) (9 . 21) (10 . 22) (13 . 35) (14 . 38) (15 . 39) (16 . 40) (18 . 42) (19 . 43) (20 . 44)) 3.744 {3/50:66} B:0 1.91696 [ 1.98600] ((1 . 14) (3 . 17) (6 . 18) (7 . 19) (8 . 20) (9 . 21) (10 . 22) (11 . 23) (13 . 35) (14 . 38) (15 . 39) (16 . 40) (18 . 42) (19 . 43) (20 . 44)) 3.057 {14/77:105} B:0 2.39026 [ 2.75987] ((7 . 19) (8 . 20) (10 . 22) (12 . 23) (13 . 35) (14 . 38) (15 . 39) (19 . 43)) 3.650 {2/21:28} B:0 3.90658 [ 4.46992] ((13 . 35) (16 . 40) (18 . 41) (19 . 43) (20 . 44)) 5.070 {2/9:10} B:0 SIMILARITY (1/min{score1}): 0.6995 [and 1/min{score2}: 0.6330] [1, 4322]: Comparing 12as_A and 1nnh_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 24 (11 H + 13 S) secondary structure elements in 1nnh_A, of which 19 satisfy the size requirements. 1.15552 [ 1.15552] ((1 . 2) (2 . 3) (5 . 6) (6 . 7) (7 . 8) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 18) (15 . 19) (16 . 20) (18 . 21) (19 . 22) (20 . 23)) 2.608 {7/102:136} B:0 1.21861 [ 1.21861] ((1 . 2) (5 . 6) (6 . 7) (7 . 8) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 18) (15 . 19) (16 . 20) (18 . 21) (19 . 22) (20 . 23)) 2.529 {6/88:120} B:0 2.37581 [ 2.37581] ((1 . 2) (2 . 3) (5 . 6) (6 . 7) (7 . 8) (8 . 10) (9 . 11) (10 . 15)) 2.745 {1/22:28} B:0 3.16668 [ 3.16668] ((9 . 11) (13 . 12) (14 . 18) (15 . 19) (19 . 22) (20 . 23)) 3.052 {0/5:15} B:0 3.17206 [ 3.17206] ((6 . 7) (9 . 11) (10 . 12) (12 . 13) (13 . 15) (19 . 22)) 4.068 {1/11:15} B:0 SIMILARITY (1/min{score1}): 0.8654 [and 1/min{score2}: 0.8654] [1, 5306]: Comparing 12as_A and 1qf6_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 59 (24 H + 35 S) secondary structure elements in 1qf6_A, of which 19 satisfy the size requirements. 1.58358 [ 1.58358] ((1 . 27) (3 . 29) (5 . 33) (6 . 34) (7 . 37) (8 . 39) (9 . 40) (13 . 41) (14 . 44) (15 . 45) (19 . 49) (20 . 50)) 2.989 {1/44:66} B:0 2.37504 [ 2.37504] ((1 . 27) (3 . 29) (5 . 33) (6 . 34) (7 . 37) (8 . 39) (9 . 40) (10 . 41)) 3.487 {0/22:28} B:0 2.71588 [ 2.71588] ((1 . 27) (5 . 33) (6 . 34) (7 . 37) (8 . 39) (9 . 40) (14 . 49)) 4.776 {1/17:21} B:0 3.16709 [ 3.16709] ((1 . 27) (3 . 29) (6 . 34) (9 . 40) (10 . 41) (12 . 42)) 7.700 {0/10:15} B:0 3.80005 [ 3.80005] ((1 . 27) (6 . 34) (9 . 40) (10 . 41) (13 . 43)) 5.057 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.6841 [and 1/min{score2}: 0.6841] [1, 5646]: Comparing 12as_A and 1riq_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 34 (20 H + 14 S) secondary structure elements in 1riq_A, of which 14 satisfy the size requirements. 1.90104 [ 1.40259] ((1 . 1) (7 . 4) (8 . 7) (9 . 8) (10 . 13) (13 . 15) (14 . 16) (15 . 18) (19 . 20) (20 . 21)) 5.535 {1/29:45} B:0 1.91148 [ 1.42810] ((1 . 1) (6 . 3) (7 . 4) (8 . 7) (9 . 8) (10 . 13) (13 . 15) (14 . 16) (15 . 18) (19 . 20)) 5.761 {2/27:45} B:0 3.16683 [ 2.33375] ((1 . 1) (7 . 4) (8 . 7) (9 . 8) (10 . 13) (14 . 20)) 6.099 {0/9:15} B:0 3.19948 [ 2.41252] ((6 . 1) (13 . 10) (14 . 16) (15 . 18) (19 . 20) (20 . 21)) 8.177 {1/7:15} B:0 3.80020 [ 2.80049] ((1 . 1) (7 . 4) (8 . 7) (9 . 11) (10 . 13)) 7.282 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.5764 [and 1/min{score2}: 0.7742] [1, 5802]: Comparing 12as_A and 1set_A, based on their crossing files. There are 22 (11 H + 11 S) secondary structure elements in 12as_A, of which 19 satisfy the size requirements. There are 33 (17 H + 16 S) secondary structure elements in 1set_A, of which 23 satisfy the size requirements. 2.37604 [ 2.87559] ((1 . 10) (2 . 11) (3 . 12) (5 . 15) (7 . 19) (8 . 20) (9 . 21) (10 . 22)) 4.093 {1/21:28} B:0 3.24963 [ 3.88108] ((1 . 10) (5 . 15) (9 . 21) (10 . 22) (13 . 25) (14 . 29)) 6.744 {2/11:15} B:0 3.80071 [ 4.60040] ((1 . 10) (7 . 19) (8 . 20) (9 . 21) (13 . 27)) 10.051 {0/4:10} B:0 3.80074 [ 4.60041] ((6 . 10) (7 . 11) (14 . 23) (15 . 25) (19 . 29)) 10.143 {0/7:10} B:0 3.81906 [ 4.61079] ((6 . 7) (12 . 16) (13 . 19) (14 . 20) (19 . 25)) 7.592 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.4384 [and 1/min{score2}: 0.4239] -------------------------------------------------------------------------------------------------------------------------