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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3510 1l0w_A)  (    1 12as_A)     0.6330   0.6995   2.6819 (   9   80  105)   0     0.6330   0.6995   22  19
( 3510 1l0w_A)  (  202 1ati_A)     0.5597   0.5026   4.8816 (   7   59   78)   0     0.6349   0.5592   22  25
( 3510 1l0w_A)  (  316 1b8a_A)     0.7673   0.8836   2.2017 (   6  113  136)   0     0.7673   0.8836   22  19
( 3510 1l0w_A)  (  397 1bia  )     0.3636   0.6665   4.4782 (   0   14   28)   0     0.4433   0.7435   22  12
( 3510 1l0w_A)  ( 1003 1e1o_A)     0.8091   0.7753   2.5417 (   7  124  153)   0     0.8091   0.7753   22  23
( 3510 1l0w_A)  ( 1229 1eov_A)     0.7464   0.7768   1.9892 (   9  112  136)   0     0.7464   0.7768   22  21
( 3510 1l0w_A)  ( 1733 1g5h_A)     0.5397   0.5908   5.1048 (   4   48   66)   0     0.5397   0.5908   22  20
( 3510 1l0w_A)  ( 2081 1h4v_B)     0.1818   0.2000   9.4491 (   0    5    6)   0     0.6296   0.6893   22  20
( 3510 1l0w_A)  ( 2166 1hc7_A)     0.5615   0.6051   3.5057 (   7   60   78)   0     0.5615   0.6051   22  20
( 3510 1l0w_A)  ( 2741 1j5w_A)     0.2273   0.3124   9.0185 (   0    8   10)   0     0.4490   0.5997   22  16
( 3510 1l0w_A)  ( 2925 1jjc_A)     0.3634   0.4699   6.5917 (   1   18   28)   0     0.5799   0.7277   22  17
( 3510 1l0w_A)  ( 2930 1jjc_B)     0.4091   0.7500   2.7013 (   0   19   36)   0     0.4091   0.7500   22  12
( 3510 1l0w_A)  ( 3510 1l0w_A)     1.0000   1.0000   0.0000 (   0  201  231)   0     1.0000   1.0000   22  22
( 3510 1l0w_A)  ( 4322 1nnh_A)     0.7663   0.8815   2.6227 (   6  108  136)   0     0.7663   0.8815   22  19
( 3510 1l0w_A)  ( 5306 1qf6_A)     0.5813   0.6648   4.0783 (   5   58   78)   0     0.6296   0.7231   22  19
( 3510 1l0w_A)  ( 5646 1riq_A)     0.2273   0.3571   4.6121 (   0    6   10)   0     0.4999   0.7846   22  14
( 3510 1l0w_A)  ( 5802 1set_A)     0.4570   0.4427   5.0342 (   6   37   55)   0     0.4570   0.4427   22  23

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