------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1657, 433]: Comparing 1fy7_A and 1bo4_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 10 (4 H + 6 S) secondary structure elements in 1bo4_A, of which 10 satisfy the size requirements. 3.16677 [ 1.66739] ((7 . 1) (9 . 2) (10 . 5) (11 . 6) (12 . 7) (15 . 8)) 5.439 {0/11:15} B:0 3.16678 [ 1.66746] ((7 . 1) (9 . 2) (10 . 5) (11 . 6) (13 . 7) (15 . 8)) 5.563 {0/10:15} B:0 3.80006 [ 2.00044] ((9 . 2) (10 . 5) (11 . 6) (13 . 7) (15 . 8)) 5.523 {0/6:10} B:0 4.75003 [ 2.50020] ((10 . 5) (11 . 6) (12 . 7) (15 . 8)) 5.335 {0/3:6} B:0 4.75022 [ 2.50154] ((1 . 1) (6 . 6) (7 . 7) (11 . 9)) 8.916 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.3158 [and 1/min{score2}: 0.5997] [1657, 435]: Comparing 1fy7_A and 1bob, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 27 (12 H + 15 S) secondary structure elements in 1bob, of which 21 satisfy the size requirements. 1.41052 [ 1.54027] ((1 . 4) (2 . 5) (3 . 9) (5 . 14) (6 . 15) (7 . 16) (9 . 17) (10 . 18) (11 . 19) (12 . 20) (15 . 22) (17 . 24) (19 . 26) (20 . 27)) 4.819 {7/81:91} B:0 3.16693 [ 3.50019] ((1 . 9) (5 . 14) (9 . 17) (15 . 22) (17 . 24) (23 . 27)) 6.813 {0/13:15} B:0 3.80012 [ 4.20009] ((1 . 9) (5 . 14) (9 . 17) (13 . 20) (23 . 27)) 6.497 {0/9:10} B:0 3.80024 [ 4.20018] ((1 . 9) (2 . 10) (5 . 14) (9 . 17) (23 . 27)) 7.648 {0/7:10} B:0 3.80034 [ 4.20025] ((7 . 2) (10 . 7) (11 . 9) (12 . 10) (15 . 12)) 8.352 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7090 [and 1/min{score2}: 0.6492] [1657, 610]: Comparing 1fy7_A and 1cjw_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 14 (7 H + 7 S) secondary structure elements in 1cjw_A, of which 13 satisfy the size requirements. 2.71445 [ 1.85767] ((7 . 1) (9 . 2) (10 . 6) (11 . 7) (12 . 9) (15 . 10) (17 . 12)) 5.456 {0/15:21} B:0 2.71448 [ 1.85776] ((7 . 1) (9 . 2) (10 . 6) (11 . 7) (13 . 9) (15 . 10) (17 . 12)) 5.675 {0/15:21} B:0 3.16709 [ 2.16800] ((7 . 1) (9 . 2) (10 . 6) (11 . 7) (13 . 9) (19 . 12)) 7.722 {0/10:15} B:0 3.17239 [ 2.18438] ((9 . 3) (10 . 6) (11 . 7) (13 . 9) (15 . 10) (17 . 12)) 7.424 {1/11:15} B:0 3.20007 [ 2.81153] ((6 . 1) (9 . 2) (10 . 6) (11 . 7) (13 . 9) (15 . 10) (17 . 12)) 6.068 {4/15:21} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.5383] [1657, 1657]: Comparing 1fy7_A and 1fy7_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23)) 0.000 {0/154:171} B:0 2.37510 [ 2.37510] ((5 . 5) (9 . 9) (13 . 12) (15 . 15) (17 . 17) (19 . 19) (20 . 20) (23 . 23)) 4.342 {0/27:28} B:0 2.37510 [ 2.37510] ((3 . 3) (5 . 5) (9 . 9) (13 . 12) (15 . 15) (17 . 17) (18 . 18) (23 . 23)) 4.367 {0/27:28} B:0 2.37510 [ 2.37510] ((3 . 3) (5 . 5) (9 . 9) (12 . 13) (15 . 15) (17 . 17) (18 . 18) (23 . 23)) 4.367 {0/27:28} B:0 3.80751 [ 3.80751] ((6 . 3) (13 . 10) (17 . 15) (20 . 17) (21 . 18)) 9.582 {1/9:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1657, 1831]: Comparing 1fy7_A and 1ghe_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 14 (6 H + 8 S) secondary structure elements in 1ghe_A, of which 13 satisfy the size requirements. 2.71443 [ 1.85758] ((7 . 1) (9 . 2) (10 . 5) (11 . 6) (12 . 7) (15 . 9) (17 . 11)) 5.214 {0/16:21} B:0 3.16681 [ 2.16712] ((9 . 2) (10 . 5) (11 . 6) (13 . 7) (15 . 9) (17 . 11)) 5.891 {0/11:15} B:0 3.20002 [ 2.81146] ((7 . 1) (9 . 3) (10 . 5) (11 . 6) (12 . 7) (15 . 9) (17 . 11)) 5.571 {4/15:21} B:0 3.80004 [ 2.60014] ((17 . 9) (18 . 10) (20 . 11) (21 . 12) (22 . 14)) 5.017 {0/5:10} B:0 4.75003 [ 3.25009] ((17 . 9) (18 . 10) (20 . 11) (22 . 14)) 5.385 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.5383] [1657, 2356]: Comparing 1fy7_A and 1i12_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 12 (6 H + 6 S) secondary structure elements in 1i12_A, of which 10 satisfy the size requirements. 2.71450 [ 1.43005] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (12 . 7) (15 . 9) (17 . 11)) 5.798 {0/16:21} B:0 2.71465 [ 1.43105] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 7) (15 . 9) (17 . 11)) 6.599 {0/15:21} B:0 3.80010 [ 2.00072] ((6 . 4) (7 . 5) (10 . 7) (12 . 10) (15 . 11)) 6.226 {0/7:10} B:0 3.80783 [ 2.05183] ((9 . 2) (13 . 7) (15 . 9) (17 . 11) (18 . 12)) 10.698 {1/9:10} B:0 4.26881 [ 3.43704] ((9 . 2) (13 . 4) (15 . 9) (17 . 11) (22 . 12)) 8.916 {3/9:10} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.6993] [1657, 2668]: Comparing 1fy7_A and 1iyk_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 30 (12 H + 18 S) secondary structure elements in 1iyk_A, of which 11 satisfy the size requirements. 3.16695 [ 1.83478] ((7 . 2) (9 . 3) (10 . 7) (11 . 8) (12 . 9) (15 . 11)) 6.951 {0/11:15} B:0 3.80031 [ 2.20158] ((9 . 3) (10 . 7) (11 . 8) (13 . 9) (15 . 11)) 8.155 {0/7:10} B:0 4.47777 [ 4.20535] ((6 . 2) (9 . 3) (10 . 7) (11 . 8) (12 . 9) (15 . 11)) 7.720 {5/12:15} B:0 4.75016 [ 2.75081] ((6 . 7) (7 . 8) (10 . 9) (12 . 12)) 8.162 {0/3:6} B:0 4.75021 [ 2.75106] ((1 . 2) (6 . 8) (7 . 9) (11 . 12)) 8.712 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.3657 [and 1/min{score2}: 0.5994] [1657, 2669]: Comparing 1fy7_A and 1iyk_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 30 (12 H + 18 S) secondary structure elements in 1iyk_A, of which 16 satisfy the size requirements. 3.16699 [ 2.66721] ((9 . 17) (10 . 20) (11 . 21) (13 . 24) (15 . 25) (17 . 27)) 7.196 {0/12:15} B:0 3.52137 [ 3.35553] ((6 . 16) (9 . 17) (10 . 20) (11 . 21) (12 . 24) (15 . 25) (17 . 27)) 6.984 {6/19:21} B:0 3.80723 [ 3.21207] ((10 . 18) (17 . 25) (18 . 26) (20 . 27) (21 . 28)) 8.122 {1/9:10} B:0 3.81114 [ 3.21857] ((6 . 20) (7 . 21) (10 . 24) (12 . 26) (15 . 27)) 5.499 {1/8:10} B:0 4.07302 [ 3.61911] ((6 . 20) (7 . 21) (10 . 24) (11 . 26) (15 . 27)) 7.907 {2/7:10} B:0 SIMILARITY (1/min{score1}): 0.4207 [and 1/min{score2}: 0.4991] [1657, 3485]: Comparing 1fy7_A and 1kzf_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 17 (9 H + 8 S) secondary structure elements in 1kzf_A, of which 16 satisfy the size requirements. 3.80006 [ 3.20010] ((17 . 10) (18 . 11) (20 . 12) (21 . 13) (22 . 14)) 5.366 {0/7:10} B:0 3.80010 [ 3.20017] ((7 . 1) (9 . 3) (10 . 4) (11 . 5) (13 . 8)) 6.148 {0/6:10} B:0 4.75001 [ 4.00002] ((6 . 4) (7 . 5) (10 . 8) (13 . 11)) 4.166 {0/2:6} B:0 4.75003 [ 4.00004] ((17 . 10) (18 . 11) (20 . 12) (22 . 14)) 5.152 {0/5:6} B:0 4.75003 [ 4.00005] ((6 . 4) (7 . 5) (13 . 11) (17 . 15)) 5.406 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.3152 [and 1/min{score2}: 0.3737] [1657, 3712]: Comparing 1fy7_A and 1lrz_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 32 (14 H + 18 S) secondary structure elements in 1lrz_A, of which 12 satisfy the size requirements. 2.71651 [ 1.72305] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (12 . 6) (15 . 8) (17 . 12)) 6.388 {1/16:21} B:0 4.75004 [ 3.00017] ((7 . 1) (9 . 2) (15 . 8) (19 . 12)) 5.878 {0/6:6} B:0 4.75009 [ 3.00034] ((1 . 4) (2 . 5) (3 . 6) (6 . 10)) 7.021 {0/4:6} B:0 4.75010 [ 3.00039] ((11 . 4) (13 . 5) (18 . 10) (20 . 12)) 7.234 {0/5:6} B:0 4.75012 [ 3.00047] ((6 . 1) (7 . 4) (11 . 9) (21 . 14)) 7.599 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.3681 [and 1/min{score2}: 0.5804] [1657, 3713]: Comparing 1fy7_A and 1lrz_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 32 (14 H + 18 S) secondary structure elements in 1lrz_A, of which 15 satisfy the size requirements. 2.48385 [ 2.07689] ((7 . 17) (9 . 18) (10 . 21) (11 . 24) (13 . 25) (15 . 27) (17 . 29) (22 . 30)) 6.713 {3/19:28} B:0 2.71441 [ 2.14310] ((7 . 17) (9 . 18) (10 . 21) (11 . 24) (12 . 25) (15 . 27) (17 . 29)) 5.028 {0/17:21} B:0 2.71442 [ 2.14312] ((7 . 17) (9 . 18) (10 . 21) (11 . 24) (13 . 25) (15 . 27) (17 . 29)) 5.103 {0/16:21} B:0 3.16670 [ 2.50007] ((7 . 17) (9 . 18) (10 . 21) (11 . 24) (13 . 25) (15 . 27)) 4.180 {0/10:15} B:0 3.16672 [ 2.50010] ((7 . 17) (9 . 18) (10 . 21) (11 . 24) (12 . 25) (15 . 27)) 4.522 {0/11:15} B:0 SIMILARITY (1/min{score1}): 0.4026 [and 1/min{score2}: 0.4815] [1657, 3828]: Comparing 1fy7_A and 1m44_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 17 (7 H + 10 S) secondary structure elements in 1m44_A, of which 14 satisfy the size requirements. 2.71456 [ 2.00069] ((7 . 1) (9 . 3) (10 . 5) (11 . 6) (12 . 7) (15 . 9) (17 . 11)) 6.177 {0/15:21} B:0 3.16697 [ 2.33409] ((7 . 1) (9 . 3) (10 . 5) (11 . 6) (13 . 7) (15 . 9)) 7.091 {0/9:15} B:0 3.80021 [ 2.80053] ((7 . 1) (9 . 3) (13 . 7) (15 . 9) (17 . 11)) 7.434 {0/9:10} B:0 3.96680 [ 3.16669] ((15 . 4) (17 . 9) (18 . 10) (20 . 11) (22 . 16)) 6.718 {1/4:10} B:0 4.48975 [ 4.01279] ((18 . 1) (19 . 3) (20 . 4) (22 . 5) (23 . 9)) 8.230 {3/8:10} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.4998] [1657, 3954]: Comparing 1fy7_A and 1mk4_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 14 (5 H + 9 S) secondary structure elements in 1mk4_A, of which 12 satisfy the size requirements. 2.71442 [ 1.71483] ((7 . 1) (9 . 2) (10 . 5) (11 . 6) (12 . 7) (15 . 8) (17 . 10)) 5.183 {0/17:21} B:0 2.71449 [ 1.71509] ((7 . 1) (9 . 2) (10 . 5) (11 . 6) (13 . 7) (15 . 8) (17 . 10)) 5.710 {0/16:21} B:0 3.34358 [ 2.52154] ((15 . 3) (17 . 8) (18 . 9) (20 . 10) (21 . 13) (22 . 14)) 7.130 {2/9:15} B:0 3.80005 [ 2.40019] ((17 . 8) (18 . 9) (20 . 10) (21 . 13) (22 . 14)) 5.110 {0/7:10} B:0 3.83486 [ 2.52942] ((11 . 1) (13 . 5) (15 . 8) (18 . 13) (22 . 14)) 7.174 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.5831] [1657, 4148]: Comparing 1fy7_A and 1n71_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 1n71_A, of which 12 satisfy the size requirements. 2.71693 [ 1.72470] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (12 . 6) (15 . 7) (17 . 10)) 5.521 {1/15:21} B:0 2.71696 [ 1.72484] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 6) (15 . 7) (17 . 10)) 5.783 {1/15:21} B:0 3.16676 [ 2.00037] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 6) (15 . 7)) 5.294 {0/9:15} B:0 3.16676 [ 2.00039] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (12 . 6) (15 . 7)) 5.348 {0/9:15} B:0 3.80003 [ 2.40012] ((17 . 7) (18 . 8) (20 . 10) (21 . 11) (22 . 12)) 4.606 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.3681 [and 1/min{score2}: 0.5798] [1657, 4210]: Comparing 1fy7_A and 1ne9_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 26 (13 H + 13 S) secondary structure elements in 1ne9_A, of which 10 satisfy the size requirements. 3.16683 [ 1.66777] ((9 . 1) (10 . 4) (11 . 5) (12 . 6) (15 . 7) (17 . 9)) 6.055 {0/13:15} B:0 3.16715 [ 1.66995] ((9 . 1) (10 . 4) (11 . 5) (13 . 6) (15 . 7) (17 . 9)) 7.954 {0/12:15} B:0 3.80006 [ 2.00043] ((9 . 1) (10 . 4) (11 . 5) (12 . 6) (15 . 7)) 5.493 {0/8:10} B:0 4.26870 [ 3.43685] ((6 . 4) (7 . 5) (10 . 6) (11 . 8) (15 . 9)) 8.060 {2/6:10} B:0 4.75008 [ 2.50057] ((6 . 4) (7 . 5) (10 . 8) (12 . 10)) 6.946 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.3158 [and 1/min{score2}: 0.5996] [1657, 4211]: Comparing 1fy7_A and 1ne9_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 26 (13 H + 13 S) secondary structure elements in 1ne9_A, of which 12 satisfy the size requirements. 2.71448 [ 1.71506] ((7 . 15) (9 . 16) (10 . 18) (11 . 19) (13 . 20) (15 . 21) (17 . 23)) 5.658 {0/15:21} B:0 4.49140 [ 3.90108] ((5 . 14) (10 . 18) (11 . 19) (15 . 21) (17 . 23)) 14.472 {3/8:10} B:0 4.75056 [ 3.00221] ((17 . 16) (19 . 17) (22 . 19) (23 . 21)) 11.192 {0/4:6} B:0 4.75182 [ 3.00719] ((6 . 18) (7 . 19) (13 . 25) (15 . 26)) 15.036 {0/3:6} B:0 4.78705 [ 3.13886] ((6 . 15) (9 . 17) (10 . 19) (11 . 20)) 8.230 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4187 [and 1/min{score2}: 0.6447] [1657, 4377]: Comparing 1fy7_A and 1nsl_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 16 (7 H + 9 S) secondary structure elements in 1nsl_A, of which 13 satisfy the size requirements. 2.71444 [ 1.85762] ((7 . 2) (9 . 3) (10 . 6) (11 . 7) (12 . 8) (15 . 10) (17 . 12)) 5.332 {0/17:21} B:0 2.71453 [ 1.85790] ((7 . 2) (9 . 3) (10 . 6) (11 . 7) (13 . 8) (15 . 10) (17 . 12)) 5.966 {0/16:21} B:0 3.80005 [ 2.60015] ((17 . 10) (18 . 11) (20 . 12) (21 . 13) (22 . 15)) 5.170 {0/6:10} B:0 4.75004 [ 3.25011] ((17 . 10) (18 . 11) (20 . 12) (22 . 15)) 5.609 {0/3:6} B:0 4.75006 [ 3.25019] ((9 . 3) (15 . 10) (17 . 12) (18 . 13)) 6.442 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.5383] [1657, 4852]: Comparing 1fy7_A and 1p0h_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1p0h_A, of which 19 satisfy the size requirements. 2.71440 [ 2.71440] ((7 . 12) (9 . 13) (10 . 16) (11 . 17) (12 . 18) (15 . 20) (17 . 22)) 4.910 {0/17:21} B:0 2.71448 [ 2.71448] ((7 . 12) (9 . 13) (10 . 16) (11 . 17) (13 . 18) (15 . 20) (17 . 22)) 5.641 {0/16:21} B:0 3.16676 [ 3.16676] ((9 . 1) (10 . 3) (11 . 4) (13 . 5) (15 . 7) (17 . 10)) 5.210 {0/9:15} B:0 3.16681 [ 3.16681] ((9 . 13) (10 . 16) (11 . 17) (13 . 18) (15 . 20) (17 . 22)) 5.855 {0/11:15} B:0 3.80008 [ 3.80008] ((7 . 12) (9 . 13) (13 . 18) (15 . 20) (17 . 22)) 5.911 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.3684] [1657, 5189]: Comparing 1fy7_A and 1q2y_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1q2y_A, of which 10 satisfy the size requirements. 2.71438 [ 1.42925] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (12 . 6) (15 . 8) (17 . 10)) 4.765 {0/17:21} B:0 2.71448 [ 1.42992] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 6) (15 . 8) (17 . 10)) 5.668 {0/16:21} B:0 4.75015 [ 2.50106] ((2 . 4) (3 . 5) (9 . 10) (10 . 13)) 8.119 {0/4:6} B:0 4.78711 [ 2.72521] ((6 . 1) (9 . 3) (10 . 5) (11 . 6)) 8.866 {1/5:6} B:0 4.83867 [ 2.97326] ((3 . 4) (9 . 8) (10 . 9) (11 . 13)) 6.418 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.6997] [1657, 5445]: Comparing 1fy7_A and 1qso_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 11 (4 H + 7 S) secondary structure elements in 1qso_A, of which 11 satisfy the size requirements. 2.71645 [ 1.58250] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 6) (15 . 7) (17 . 9)) 6.098 {1/16:21} B:0 3.16675 [ 1.83375] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 6) (15 . 7)) 5.089 {0/10:15} B:0 3.17222 [ 1.86138] ((9 . 2) (10 . 4) (11 . 5) (13 . 6) (15 . 7) (17 . 9)) 6.310 {1/11:15} B:0 3.80005 [ 2.20024] ((6 . 4) (7 . 5) (10 . 6) (13 . 8) (15 . 9)) 5.075 {0/6:10} B:0 4.29969 [ 4.13942] ((6 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 6) (15 . 7) (17 . 9)) 6.640 {7/17:21} B:0 SIMILARITY (1/min{score1}): 0.3681 [and 1/min{score2}: 0.6319] [1657, 5446]: Comparing 1fy7_A and 1qst_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 13 (7 H + 6 S) secondary structure elements in 1qst_A, of which 11 satisfy the size requirements. 2.71444 [ 1.57220] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (12 . 7) (15 . 9) (17 . 11)) 5.299 {0/17:21} B:0 2.71444 [ 1.57223] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (13 . 7) (15 . 9) (17 . 11)) 5.352 {0/16:21} B:0 3.16679 [ 1.83395] ((9 . 2) (10 . 4) (11 . 5) (12 . 7) (15 . 9) (17 . 11)) 5.614 {0/12:15} B:0 3.96682 [ 2.81196] ((15 . 3) (17 . 9) (18 . 10) (20 . 11) (22 . 13)) 6.907 {1/4:10} B:0 4.75001 [ 2.75005] ((17 . 9) (18 . 10) (20 . 11) (22 . 13)) 4.080 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.3684 [and 1/min{score2}: 0.6361] [1657, 5557]: Comparing 1fy7_A and 1r57_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1r57_A, of which 8 satisfy the size requirements. 3.16679 [ 1.33494] ((7 . 1) (10 . 2) (11 . 3) (13 . 4) (15 . 5) (17 . 7)) 5.622 {0/8:15} B:0 3.16680 [ 1.33515] ((7 . 1) (10 . 2) (11 . 3) (12 . 4) (15 . 5) (17 . 7)) 5.801 {0/8:15} B:0 3.80009 [ 1.60119] ((10 . 2) (11 . 3) (12 . 4) (15 . 5) (17 . 7)) 5.980 {0/4:10} B:0 4.75014 [ 2.00183] ((11 . 1) (12 . 2) (15 . 5) (17 . 7)) 7.879 {0/4:6} B:0 4.76796 [ 2.20745] ((13 . 1) (17 . 5) (18 . 6) (20 . 7)) 6.582 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.3158 [and 1/min{score2}: 0.7491] [1657, 5841]: Comparing 1fy7_A and 1sqh_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 24 (12 H + 12 S) secondary structure elements in 1sqh_A, of which 22 satisfy the size requirements. 2.71475 [ 3.14316] ((7 . 1) (9 . 2) (10 . 5) (11 . 7) (12 . 8) (15 . 9) (17 . 11)) 7.039 {0/16:21} B:0 3.80014 [ 4.40009] ((7 . 1) (9 . 2) (12 . 5) (15 . 9) (17 . 11)) 6.751 {0/9:10} B:0 3.80024 [ 4.40015] ((10 . 5) (11 . 7) (13 . 8) (15 . 9) (17 . 11)) 7.627 {0/5:10} B:0 3.80034 [ 4.40022] ((10 . 7) (11 . 8) (18 . 14) (20 . 15) (22 . 17)) 8.381 {0/5:10} B:0 3.80059 [ 4.40038] ((3 . 12) (6 . 14) (9 . 16) (10 . 18) (11 . 19)) 9.609 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.4210 [and 1/min{score2}: 0.3636] [1657, 6003]: Comparing 1fy7_A and 1ufh_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1ufh_A, of which 9 satisfy the size requirements. 3.80009 [ 1.80082] ((10 . 5) (11 . 6) (12 . 7) (15 . 9) (17 . 11)) 5.946 {0/7:10} B:0 3.80010 [ 1.80090] ((5 . 3) (6 . 5) (7 . 6) (10 . 7) (15 . 11)) 6.095 {0/8:10} B:0 4.29967 [ 4.12748] ((6 . 1) (9 . 2) (10 . 5) (11 . 6) (13 . 7) (15 . 9) (17 . 11)) 6.332 {7/17:21} B:0 4.75005 [ 2.25050] ((5 . 3) (6 . 5) (7 . 6) (15 . 11)) 6.206 {0/5:6} B:0 4.78755 [ 2.54448] ((17 . 2) (19 . 3) (21 . 5) (22 . 6)) 11.725 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.2632 [and 1/min{score2}: 0.5553] [1657, 6244]: Comparing 1fy7_A and 1vhs_A, based on their crossing files. There are 24 (10 H + 14 S) secondary structure elements in 1fy7_A, of which 19 satisfy the size requirements. There are 14 (6 H + 8 S) secondary structure elements in 1vhs_A, of which 13 satisfy the size requirements. 2.71634 [ 1.86354] ((7 . 1) (9 . 2) (10 . 4) (11 . 5) (12 . 7) (15 . 9) (17 . 11)) 5.321 {1/16:21} B:0 3.17218 [ 2.18372] ((9 . 2) (10 . 4) (11 . 5) (13 . 7) (15 . 9) (17 . 11)) 5.943 {1/11:15} B:0 3.22596 [ 2.33611] ((15 . 2) (17 . 9) (18 . 10) (20 . 11) (21 . 12) (22 . 14)) 6.623 {2/12:15} B:0 3.80006 [ 2.60017] ((17 . 9) (18 . 10) (20 . 11) (21 . 12) (22 . 14)) 5.307 {0/7:10} B:0 3.80700 [ 2.62165] ((7 . 1) (9 . 2) (13 . 7) (15 . 9) (17 . 11)) 5.771 {1/9:10} B:0 SIMILARITY (1/min{score1}): 0.3681 [and 1/min{score2}: 0.5366] -------------------------------------------------------------------------------------------------------------------------