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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1657 1fy7_A)  (  433 1bo4_A)     0.3158   0.5997   5.4391 (   0   11   15)   0     0.3158   0.5997   19  10
( 1657 1fy7_A)  (  435 1bob  )     0.7090   0.6492   4.8190 (   7   81   91)   0     0.7090   0.6492   19  21
( 1657 1fy7_A)  (  610 1cjw_A)     0.3684   0.5383   5.4559 (   0   15   21)   0     0.3684   0.5383   19  13
( 1657 1fy7_A)  ( 1657 1fy7_A)     1.0000   1.0000   0.0000 (   0  154  171)   0     1.0000   1.0000   19  19
( 1657 1fy7_A)  ( 1831 1ghe_A)     0.3684   0.5383   5.2137 (   0   16   21)   0     0.3684   0.5383   19  13
( 1657 1fy7_A)  ( 2356 1i12_A)     0.3684   0.6993   5.7984 (   0   16   21)   0     0.3684   0.6993   19  10
( 1657 1fy7_A)  ( 2668 1iyk_A)     0.3158   0.5450   6.9511 (   0   11   15)   0     0.3657   0.5994   19  11
( 1657 1fy7_A)  ( 2669 1iyk_A)     0.3158   0.3749   7.1963 (   0   12   15)   0     0.4207   0.4991   19  16
( 1657 1fy7_A)  ( 3485 1kzf_A)     0.2632   0.3125   5.3656 (   0    7   10)   0     0.3152   0.3737   19  16
( 1657 1fy7_A)  ( 3712 1lrz_A)     0.3681   0.5804   6.3879 (   1   16   21)   0     0.3681   0.5804   19  12
( 1657 1fy7_A)  ( 3713 1lrz_A)     0.4026   0.4815   6.7130 (   3   19   28)   0     0.4026   0.4815   19  15
( 1657 1fy7_A)  ( 3828 1m44_A)     0.3684   0.4998   6.1767 (   0   15   21)   0     0.3684   0.4998   19  14
( 1657 1fy7_A)  ( 3954 1mk4_A)     0.3684   0.5831   5.1825 (   0   17   21)   0     0.3684   0.5831   19  12
( 1657 1fy7_A)  ( 4148 1n71_A)     0.3681   0.5798   5.5209 (   1   15   21)   0     0.3681   0.5798   19  12
( 1657 1fy7_A)  ( 4210 1ne9_A)     0.3158   0.5996   6.0545 (   0   13   15)   0     0.3158   0.5996   19  10
( 1657 1fy7_A)  ( 4211 1ne9_A)     0.3684   0.5831   5.6581 (   0   15   21)   0     0.4187   0.6447   19  12
( 1657 1fy7_A)  ( 4377 1nsl_A)     0.3684   0.5383   5.3317 (   0   17   21)   0     0.3684   0.5383   19  13
( 1657 1fy7_A)  ( 4852 1p0h_A)     0.3684   0.3684   4.9102 (   0   17   21)   0     0.3684   0.3684   19  19
( 1657 1fy7_A)  ( 5189 1q2y_A)     0.3684   0.6997   4.7648 (   0   17   21)   0     0.3684   0.6997   19  10
( 1657 1fy7_A)  ( 5445 1qso_A)     0.3681   0.6319   6.0980 (   1   16   21)   0     0.3681   0.6319   19  11
( 1657 1fy7_A)  ( 5446 1qst_A)     0.3684   0.6361   5.2991 (   0   17   21)   0     0.3684   0.6361   19  11
( 1657 1fy7_A)  ( 5557 1r57_A)     0.3158   0.7491   5.6224 (   0    8   15)   0     0.3158   0.7491   19   8
( 1657 1fy7_A)  ( 5841 1sqh_A)     0.3684   0.3182   7.0390 (   0   16   21)   0     0.4210   0.3636   19  22
( 1657 1fy7_A)  ( 6003 1ufh_A)     0.2632   0.5553   5.9463 (   0    7   10)   0     0.2632   0.5553   19   9
( 1657 1fy7_A)  ( 6244 1vhs_A)     0.3681   0.5366   5.3210 (   1   16   21)   0     0.3681   0.5366   19  13

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