------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1831 1ghe_A) ( 433 1bo4_A) 0.7685 0.9974 3.3433 ( 1 33 45) 0 0.7685 0.9974 13 10 ( 1831 1ghe_A) ( 435 1bob ) 0.6142 0.3808 3.7253 ( 1 21 28) 0 0.6910 0.4285 13 21 ( 1831 1ghe_A) ( 610 1cjw_A) 0.8455 0.8455 3.5305 ( 1 41 55) 0 0.8455 0.8455 13 13 ( 1831 1ghe_A) ( 1657 1fy7_A) 0.4614 0.3158 5.8912 ( 0 11 15) 0 0.4615 0.3453 13 19 ( 1831 1ghe_A) ( 1831 1ghe_A) 1.0000 1.0000 0.0000 ( 0 60 78) 0 1.0000 1.0000 13 13 ( 1831 1ghe_A) ( 2356 1i12_A) 0.7690 0.9991 3.9639 ( 0 35 45) 0 0.7690 0.9991 13 10 ( 1831 1ghe_A) ( 2668 1iyk_A) 0.6910 0.8153 5.1049 ( 1 26 36) 0 0.6910 0.8153 13 11 ( 1831 1ghe_A) ( 2669 1iyk_A) 0.3077 0.2500 7.2473 ( 0 3 6) 0 0.9221 0.7497 13 16 ( 1831 1ghe_A) ( 3485 1kzf_A) 0.7619 0.6224 4.1809 ( 2 35 45) 0 0.7619 0.6224 13 16 ( 1831 1ghe_A) ( 3712 1lrz_A) 0.6906 0.7475 5.3931 ( 1 24 36) 0 0.6906 0.7475 13 12 ( 1831 1ghe_A) ( 3713 1lrz_A) 0.7688 0.6665 4.5076 ( 0 34 45) 0 0.7688 0.6665 13 15 ( 1831 1ghe_A) ( 3828 1m44_A) 0.7687 0.7139 4.6858 ( 0 32 45) 0 0.7687 0.7139 13 14 ( 1831 1ghe_A) ( 3954 1mk4_A) 0.8457 0.9160 4.0927 ( 0 41 55) 0 0.8457 0.9160 13 12 ( 1831 1ghe_A) ( 4148 1n71_A) 0.8456 0.9159 2.7680 ( 1 40 55) 0 0.8456 0.9159 13 12 ( 1831 1ghe_A) ( 4210 1ne9_A) 0.7580 0.9608 6.0658 ( 2 32 45) 0 0.7580 0.9608 13 10 ( 1831 1ghe_A) ( 4211 1ne9_A) 0.6922 0.7499 3.2805 ( 0 26 36) 0 0.6922 0.7499 13 12 ( 1831 1ghe_A) ( 4377 1nsl_A) 0.9965 0.9965 2.7731 ( 2 59 78) 0 0.9965 0.9965 13 13 ( 1831 1ghe_A) ( 4852 1p0h_A) 0.7691 0.5263 3.5644 ( 0 35 45) 0 0.8459 0.5789 13 19 ( 1831 1ghe_A) ( 5189 1q2y_A) 0.7685 0.9973 3.0970 ( 1 32 45) 0 0.7685 0.9973 13 10 ( 1831 1ghe_A) ( 5445 1qso_A) 0.7621 0.8929 3.5198 ( 2 35 45) 0 0.7621 0.8929 13 11 ( 1831 1ghe_A) ( 5446 1qst_A) 0.7692 0.9089 2.8480 ( 0 33 45) 0 0.7692 0.9089 13 11 ( 1831 1ghe_A) ( 5557 1r57_A) 0.5384 0.8747 3.6463 ( 0 13 21) 0 0.5384 0.8747 13 8 ( 1831 1ghe_A) ( 5841 1sqh_A) 0.4363 0.3936 6.0511 ( 9 40 55) 0 0.8451 0.4999 13 22 ( 1831 1ghe_A) ( 6003 1ufh_A) 0.6822 0.9429 4.1787 ( 2 28 36) 0 0.6822 0.9429 13 9 ( 1831 1ghe_A) ( 6244 1vhs_A) 0.9227 0.9227 2.7726 ( 1 50 66) 0 0.9227 0.9227 13 13 -------------------------------------------------------------------------------------------------------------------------