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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5446 1qst_A)  (  433 1bo4_A)     0.8177   0.8993   4.2358 (   0   29   36)   0     0.8177   0.8993   11  10
( 5446 1qst_A)  (  435 1bob  )     0.7250   0.3809   3.3173 (   1   22   28)   0     0.7250   0.3809   11  21
( 5446 1qst_A)  (  610 1cjw_A)     0.9077   0.7686   2.6624 (   1   33   45)   0     0.9077   0.7686   11  13
( 5446 1qst_A)  ( 1657 1fy7_A)     0.6361   0.3684   5.2991 (   0   17   21)   0     0.6361   0.3684   11  19
( 5446 1qst_A)  ( 1831 1ghe_A)     0.9089   0.7692   2.8480 (   0   33   45)   0     0.9089   0.7692   11  13
( 5446 1qst_A)  ( 2356 1i12_A)     0.7270   0.7995   4.4371 (   0   22   28)   0     0.7270   0.7995   11  10
( 5446 1qst_A)  ( 2668 1iyk_A)     0.7244   0.7244   4.4153 (   1   21   28)   0     0.7244   0.7244   11  11
( 5446 1qst_A)  ( 2669 1iyk_A)     0.4891   0.4588   5.5659 (   7   35   45)   0     0.9077   0.6248   11  16
( 5446 1qst_A)  ( 3485 1kzf_A)     0.7958   0.5589   3.1499 (   2   28   36)   0     0.7958   0.5589   11  16
( 5446 1qst_A)  ( 3712 1lrz_A)     0.8147   0.7477   4.9008 (   1   24   36)   0     0.8147   0.7477   11  12
( 5446 1qst_A)  ( 3713 1lrz_A)     0.8179   0.5999   3.7067 (   0   28   36)   0     0.8179   0.5999   11  15
( 5446 1qst_A)  ( 3828 1m44_A)     0.9089   0.7142   3.1563 (   0   33   45)   0     0.9089   0.7142   11  14
( 5446 1qst_A)  ( 3954 1mk4_A)     0.9089   0.8332   2.9977 (   0   35   45)   0     0.9089   0.8332   11  12
( 5446 1qst_A)  ( 4148 1n71_A)     0.9077   0.8325   2.2027 (   1   33   45)   0     0.9077   0.8325   11  12
( 5446 1qst_A)  ( 4210 1ne9_A)     0.3636   0.3999   7.6240 (   0    4    6)   0     0.3636   0.3999   11  10
( 5446 1qst_A)  ( 4211 1ne9_A)     0.8181   0.7499   2.8254 (   0   27   36)   0     0.8181   0.7499   11  12
( 5446 1qst_A)  ( 4377 1nsl_A)     0.9080   0.7688   4.6281 (   0   35   45)   0     0.9080   0.7688   11  13
( 5446 1qst_A)  ( 4852 1p0h_A)     0.8177   0.4737   4.2557 (   0   23   36)   0     0.9086   0.5263   11  19
( 5446 1qst_A)  ( 5189 1q2y_A)     0.9076   0.9975   3.1672 (   1   33   45)   0     0.9076   0.9975   11  10
( 5446 1qst_A)  ( 5445 1qso_A)     0.7985   0.7985   3.3954 (   2   29   36)   0     0.7985   0.7985   11  11
( 5446 1qst_A)  ( 5446 1qst_A)     1.0000   1.0000   0.0000 (   0   45   55)   0     1.0000   1.0000   11  11
( 5446 1qst_A)  ( 5557 1r57_A)     0.6363   0.8749   2.9443 (   0   13   21)   0     0.6363   0.8749   11   8
( 5446 1qst_A)  ( 5841 1sqh_A)     0.8840   0.4537   6.0559 (   2   32   45)   0     0.9953   0.4999   11  22
( 5446 1qst_A)  ( 6003 1ufh_A)     0.8165   0.9953   4.2173 (   1   29   36)   0     0.8165   0.9953   11   9
( 5446 1qst_A)  ( 6244 1vhs_A)     0.9074   0.7685   3.8067 (   1   34   45)   0     0.9074   0.7685   11  13

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