------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5446 1qst_A) ( 433 1bo4_A) 0.8177 0.8993 4.2358 ( 0 29 36) 0 0.8177 0.8993 11 10 ( 5446 1qst_A) ( 435 1bob ) 0.7250 0.3809 3.3173 ( 1 22 28) 0 0.7250 0.3809 11 21 ( 5446 1qst_A) ( 610 1cjw_A) 0.9077 0.7686 2.6624 ( 1 33 45) 0 0.9077 0.7686 11 13 ( 5446 1qst_A) ( 1657 1fy7_A) 0.6361 0.3684 5.2991 ( 0 17 21) 0 0.6361 0.3684 11 19 ( 5446 1qst_A) ( 1831 1ghe_A) 0.9089 0.7692 2.8480 ( 0 33 45) 0 0.9089 0.7692 11 13 ( 5446 1qst_A) ( 2356 1i12_A) 0.7270 0.7995 4.4371 ( 0 22 28) 0 0.7270 0.7995 11 10 ( 5446 1qst_A) ( 2668 1iyk_A) 0.7244 0.7244 4.4153 ( 1 21 28) 0 0.7244 0.7244 11 11 ( 5446 1qst_A) ( 2669 1iyk_A) 0.4891 0.4588 5.5659 ( 7 35 45) 0 0.9077 0.6248 11 16 ( 5446 1qst_A) ( 3485 1kzf_A) 0.7958 0.5589 3.1499 ( 2 28 36) 0 0.7958 0.5589 11 16 ( 5446 1qst_A) ( 3712 1lrz_A) 0.8147 0.7477 4.9008 ( 1 24 36) 0 0.8147 0.7477 11 12 ( 5446 1qst_A) ( 3713 1lrz_A) 0.8179 0.5999 3.7067 ( 0 28 36) 0 0.8179 0.5999 11 15 ( 5446 1qst_A) ( 3828 1m44_A) 0.9089 0.7142 3.1563 ( 0 33 45) 0 0.9089 0.7142 11 14 ( 5446 1qst_A) ( 3954 1mk4_A) 0.9089 0.8332 2.9977 ( 0 35 45) 0 0.9089 0.8332 11 12 ( 5446 1qst_A) ( 4148 1n71_A) 0.9077 0.8325 2.2027 ( 1 33 45) 0 0.9077 0.8325 11 12 ( 5446 1qst_A) ( 4210 1ne9_A) 0.3636 0.3999 7.6240 ( 0 4 6) 0 0.3636 0.3999 11 10 ( 5446 1qst_A) ( 4211 1ne9_A) 0.8181 0.7499 2.8254 ( 0 27 36) 0 0.8181 0.7499 11 12 ( 5446 1qst_A) ( 4377 1nsl_A) 0.9080 0.7688 4.6281 ( 0 35 45) 0 0.9080 0.7688 11 13 ( 5446 1qst_A) ( 4852 1p0h_A) 0.8177 0.4737 4.2557 ( 0 23 36) 0 0.9086 0.5263 11 19 ( 5446 1qst_A) ( 5189 1q2y_A) 0.9076 0.9975 3.1672 ( 1 33 45) 0 0.9076 0.9975 11 10 ( 5446 1qst_A) ( 5445 1qso_A) 0.7985 0.7985 3.3954 ( 2 29 36) 0 0.7985 0.7985 11 11 ( 5446 1qst_A) ( 5446 1qst_A) 1.0000 1.0000 0.0000 ( 0 45 55) 0 1.0000 1.0000 11 11 ( 5446 1qst_A) ( 5557 1r57_A) 0.6363 0.8749 2.9443 ( 0 13 21) 0 0.6363 0.8749 11 8 ( 5446 1qst_A) ( 5841 1sqh_A) 0.8840 0.4537 6.0559 ( 2 32 45) 0 0.9953 0.4999 11 22 ( 5446 1qst_A) ( 6003 1ufh_A) 0.8165 0.9953 4.2173 ( 1 29 36) 0 0.8165 0.9953 11 9 ( 5446 1qst_A) ( 6244 1vhs_A) 0.9074 0.7685 3.8067 ( 1 34 45) 0 0.9074 0.7685 11 13 -------------------------------------------------------------------------------------------------------------------------