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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1402 1f5m_A)  (  100 1acf  )     0.7271   0.6665   4.0314 (   0   14   28)   0     0.7271   0.6665   11  12
( 1402 1f5m_A)  (  496 1byw_A)     0.5454   0.7496   4.5970 (   0    6   15)   0     0.6014   0.7496   11   8
( 1402 1f5m_A)  ( 1279 1ew0_A)     0.5454   0.5999   4.5172 (   0    8   15)   0     0.5454   0.5999   11  10
( 1402 1f5m_A)  ( 1402 1f5m_A)     1.0000   1.0000   0.0000 (   0   42   55)   0     1.0000   1.0000   11  11
( 1402 1f5m_A)  ( 1985 1gw5_M)     0.3635   0.4439   9.3217 (   0    4    6)   0     0.7269   0.8877   11   9
( 1402 1f5m_A)  ( 1986 1gw5_S)     0.3636   0.3999   6.9412 (   0    5    6)   0     0.6358   0.6992   11  10
( 1402 1f5m_A)  ( 2072 1h3q_A)     0.6360   0.7767   5.6000 (   0   13   21)   0     0.7269   0.8879   11   9
( 1402 1f5m_A)  ( 2139 1h8m_A)     0.5452   0.7488   6.0088 (   0   11   15)   0     0.6359   0.8727   11   8
( 1402 1f5m_A)  ( 2472 1ifq_A)     0.6361   0.8738   5.0307 (   0   13   21)   0     0.7268   0.9978   11   8
( 1402 1f5m_A)  ( 2727 1j3w_A)     0.7269   0.9984   4.5217 (   0   17   28)   0     0.7269   0.9984   11   8
( 1402 1f5m_A)  ( 3527 1l3l_A)     0.8179   0.7498   3.8851 (   0   24   36)   0     0.8179   0.7498   11  12
( 1402 1f5m_A)  ( 3652 1ll8_A)     0.4545   0.7135   5.7134 (   0    4   10)   0     0.4545   0.7135   11   7
( 1402 1f5m_A)  ( 3903 1mc0_A)     0.8180   0.7499   3.3400 (   0   27   36)   0     0.8180   0.7499   11  12
( 1402 1f5m_A)  ( 3904 1mc0_A)     0.7272   0.8886   3.5448 (   0   19   28)   0     0.7272   0.8886   11   9
( 1402 1f5m_A)  ( 3961 1mkm_A)     0.8181   0.8181   2.8085 (   0   25   36)   0     0.8181   0.8181   11  11
( 1402 1f5m_A)  ( 4177 1n9l_A)     0.5454   0.7496   4.5132 (   0    6   15)   0     0.5454   0.7496   11   8
( 1402 1f5m_A)  ( 4366 1nrj_A)     0.5454   0.6000   3.5723 (   0    6   15)   0     0.8141   0.8935   11  10
( 1402 1f5m_A)  ( 4420 1nwz_A)     0.4544   0.4544   6.1795 (   0    6   10)   0     0.7269   0.7269   11  11
( 1402 1f5m_A)  ( 4674 1oj5_A)     0.5454   0.6665   4.3375 (   0    7   15)   0     0.6360   0.7767   11   9
( 1402 1f5m_A)  ( 4676 1ojg_A)     0.5450   0.6656   6.8529 (   0    9   15)   0     0.6362   0.7774   11   9
( 1402 1f5m_A)  ( 4856 1p0z_A)     0.4544   0.4997   7.0227 (   0    8   10)   0     0.7269   0.7994   11  10
( 1402 1f5m_A)  ( 4938 1p97_A)     0.4545   0.7140   4.3538 (   0    2   10)   0     0.4545   0.7141   11   7
( 1402 1f5m_A)  ( 5065 1pne  )     0.7272   0.7272   3.3406 (   0   17   28)   0     0.7272   0.7272   11  11
( 1402 1f5m_A)  ( 6238 1vhm_A)     0.9090   0.9999   2.3812 (   0   30   45)   0     0.9090   0.9999   11  10
( 1402 1f5m_A)  ( 6584 3nul  )     0.7270   0.7996   4.1693 (   0   13   28)   0     0.7270   0.7996   11  10

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