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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3903 1mc0_A)  (  100 1acf  )     0.5833   0.5833   3.7030 (   0   14   21)   0     0.5833   0.5833   12  12
( 3903 1mc0_A)  (  496 1byw_A)     0.4166   0.6249   4.3383 (   0    5   10)   0     0.4998   0.7487   12   8
( 3903 1mc0_A)  ( 1279 1ew0_A)     0.5831   0.6994   5.5592 (   0   16   21)   0     0.5831   0.6994   12  10
( 3903 1mc0_A)  ( 1402 1f5m_A)     0.7499   0.8180   3.3400 (   0   27   36)   0     0.7499   0.8180   12  11
( 3903 1mc0_A)  ( 1985 1gw5_M)     0.3333   0.4443   6.9928 (   0    5    6)   0     0.6298   0.7772   12   9
( 3903 1mc0_A)  ( 1986 1gw5_S)     0.3333   0.4000   5.2792 (   0    5    6)   0     0.6662   0.7988   12  10
( 3903 1mc0_A)  ( 2072 1h3q_A)     0.4999   0.6662   5.5933 (   0   11   15)   0     0.5832   0.7770   12   9
( 3903 1mc0_A)  ( 2139 1h8m_A)     0.3333   0.4996   7.6831 (   0    3    6)   0     0.5828   0.8710   12   8
( 3903 1mc0_A)  ( 2472 1ifq_A)     0.3333   0.4997   6.8829 (   0    4    6)   0     0.5831   0.8732   12   8
( 3903 1mc0_A)  ( 2727 1j3w_A)     0.5831   0.8736   5.1950 (   0   16   21)   0     0.5831   0.8736   12   8
( 3903 1mc0_A)  ( 3527 1l3l_A)     0.7496   0.7496   4.6333 (   0   29   36)   0     0.7496   0.7496   12  12
( 3903 1mc0_A)  ( 3652 1ll8_A)     0.4166   0.7136   5.6730 (   0    6   10)   0     0.4166   0.7136   12   7
( 3903 1mc0_A)  ( 3903 1mc0_A)     1.0000   1.0000   0.0000 (   0   57   66)   0     1.0000   1.0000   12  12
( 3903 1mc0_A)  ( 3904 1mc0_A)     0.6656   0.8845   4.5802 (   1   25   28)   0     0.7438   0.9749   12   9
( 3903 1mc0_A)  ( 3961 1mkm_A)     0.6666   0.7271   3.6511 (   0   21   28)   0     0.6666   0.7271   12  11
( 3903 1mc0_A)  ( 4177 1n9l_A)     0.4167   0.6249   4.2662 (   0    5   10)   0     0.4998   0.7487   12   8
( 3903 1mc0_A)  ( 4366 1nrj_A)     0.4166   0.5000   4.4978 (   0    6   10)   0     0.7350   0.8644   12  10
( 3903 1mc0_A)  ( 4420 1nwz_A)     0.5000   0.5454   4.0260 (   0   11   15)   0     0.5833   0.6362   12  11
( 3903 1mc0_A)  ( 4674 1oj5_A)     0.4166   0.5554   5.5547 (   0    7   10)   0     0.4998   0.6660   12   9
( 3903 1mc0_A)  ( 4676 1ojg_A)     0.4997   0.6652   7.3577 (   0   10   15)   0     0.6357   0.7830   12   9
( 3903 1mc0_A)  ( 4856 1p0z_A)     0.4165   0.4997   7.2632 (   0    8   10)   0     0.6652   0.7964   12  10
( 3903 1mc0_A)  ( 4938 1p97_A)     0.3333   0.5713   4.8906 (   0    4    6)   0     0.4166   0.7139   12   7
( 3903 1mc0_A)  ( 5065 1pne  )     0.5833   0.6363   2.8832 (   0   14   21)   0     0.5833   0.6363   12  11
( 3903 1mc0_A)  ( 6238 1vhm_A)     0.7498   0.8995   3.8023 (   0   26   36)   0     0.7498   0.8995   12  10
( 3903 1mc0_A)  ( 6584 3nul  )     0.5833   0.6999   3.6742 (   0   12   21)   0     0.5833   0.6999   12  10

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