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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4177 1n9l_A)  (  100 1acf  )     0.7490   0.4999   5.7251 (   0   10   15)   0     0.8654   0.5820    8  12
( 4177 1n9l_A)  (  496 1byw_A)     0.9999   0.9999   1.7025 (   0   21   28)   0     0.9999   0.9999    8   8
( 4177 1n9l_A)  ( 1279 1ew0_A)     0.9999   0.8000   2.3765 (   0   20   28)   0     0.9999   0.8000    8  10
( 4177 1n9l_A)  ( 1402 1f5m_A)     0.7496   0.5454   4.5132 (   0    6   15)   0     0.7496   0.5454    8  11
( 4177 1n9l_A)  ( 1985 1gw5_M)     0.7495   0.6664   4.8188 (   0   11   15)   0     0.7495   0.6664    8   9
( 4177 1n9l_A)  ( 1986 1gw5_S)     0.7495   0.5999   4.7316 (   0   11   15)   0     0.7495   0.5999    8  10
( 4177 1n9l_A)  ( 2072 1h3q_A)     0.7492   0.6662   5.5324 (   0   11   15)   0     0.7492   0.6662    8   9
( 4177 1n9l_A)  ( 2139 1h8m_A)     0.6247   0.6247   5.3210 (   0    7   10)   0     0.6247   0.6247    8   8
( 4177 1n9l_A)  ( 2472 1ifq_A)     0.4998   0.4998   6.2098 (   0    3    6)   0     0.8408   0.8408    8   8
( 4177 1n9l_A)  ( 2727 1j3w_A)     0.6247   0.6247   5.4395 (   0    4   10)   0     0.6247   0.6247    8   8
( 4177 1n9l_A)  ( 3527 1l3l_A)     0.8746   0.5833   3.8004 (   0   13   21)   0     0.8746   0.5833    8  12
( 4177 1n9l_A)  ( 3652 1ll8_A)     0.8738   0.9976   5.0230 (   0   14   21)   0     0.8738   0.9976    8   7
( 4177 1n9l_A)  ( 3903 1mc0_A)     0.6249   0.4167   4.2662 (   0    5   10)   0     0.7487   0.4998    8  12
( 4177 1n9l_A)  ( 3904 1mc0_A)     0.4998   0.4444   6.1458 (   0    2    6)   1     0.4998   0.4444    8   9
( 4177 1n9l_A)  ( 3961 1mkm_A)     0.6796   0.5284   4.0128 (   1    9   15)   0     0.6796   0.5284    8  11
( 4177 1n9l_A)  ( 4177 1n9l_A)     1.0000   1.0000   0.0000 (   0   21   28)   0     1.0000   1.0000    8   8
( 4177 1n9l_A)  ( 4366 1nrj_A)     0.7492   0.5997   5.4004 (   0    9   15)   0     0.7492   0.5997    8  10
( 4177 1n9l_A)  ( 4420 1nwz_A)     0.9998   0.7272   2.5182 (   0   17   28)   0     0.9998   0.7272    8  11
( 4177 1n9l_A)  ( 4674 1oj5_A)     0.8726   0.7765   5.8972 (   0   13   21)   0     0.8726   0.7765    8   9
( 4177 1n9l_A)  ( 4676 1ojg_A)     0.6250   0.5555   3.3344 (   0    5   10)   0     0.6250   0.5555    8   9
( 4177 1n9l_A)  ( 4856 1p0z_A)     0.8513   0.6919   2.7688 (   1   15   21)   0     0.8513   0.6919    8  10
( 4177 1n9l_A)  ( 4938 1p97_A)     0.8748   0.9997   2.9772 (   0   14   21)   0     0.8748   0.9997    8   7
( 4177 1n9l_A)  ( 5065 1pne  )     0.7492   0.5453   5.4377 (   0   10   15)   0     0.7496   0.5454    8  11
( 4177 1n9l_A)  ( 6238 1vhm_A)     0.1987   0.1970   7.4418 (   1    2    6)   0     0.6075   0.5385    8  10
( 4177 1n9l_A)  ( 6584 3nul  )     0.4996   0.3999   7.3927 (   0    2    6)   0     0.7497   0.5999    8  10

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