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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4676 1ojg_A)  (  100 1acf  )     0.5554   0.4166   5.4259 (   0    7   10)   0     0.7770   0.5832    9  12
( 4676 1ojg_A)  (  496 1byw_A)     0.5555   0.6249   3.9633 (   0    5   10)   0     0.5555   0.6249    9   8
( 4676 1ojg_A)  ( 1279 1ew0_A)     0.6665   0.5999   4.1174 (   0   10   15)   0     0.6665   0.6231    9  10
( 4676 1ojg_A)  ( 1402 1f5m_A)     0.6656   0.5450   6.8529 (   0    9   15)   0     0.7774   0.6362    9  11
( 4676 1ojg_A)  ( 1985 1gw5_M)     0.2862   0.2862   6.6874 (   1    3    6)   0     0.7685   0.7685    9   9
( 4676 1ojg_A)  ( 1986 1gw5_S)     0.4154   0.3819  11.2456 (   1    6    6)   0     0.7679   0.6941    9  10
( 4676 1ojg_A)  ( 2072 1h3q_A)     0.2861   0.2861   8.4675 (   1    3    6)   0     0.7658   0.7658    9   9
( 4676 1ojg_A)  ( 2139 1h8m_A)     0.4443   0.4997   7.2258 (   0    3    6)   0     0.5105   0.5518    9   8
( 4676 1ojg_A)  ( 2472 1ifq_A)     0.2441   0.2462  10.1166 (   2    5    6)   0     0.7624   0.8481    9   8
( 4676 1ojg_A)  ( 2727 1j3w_A)     0.4442   0.4996   7.4181 (   0    4    6)   0     0.7592   0.8426    9   8
( 4676 1ojg_A)  ( 3527 1l3l_A)     0.7772   0.5832   4.8608 (   0   15   21)   0     0.7772   0.5832    9  12
( 4676 1ojg_A)  ( 3652 1ll8_A)     0.4443   0.5709   6.7748 (   0    4    6)   0     0.4443   0.5709    9   7
( 4676 1ojg_A)  ( 3903 1mc0_A)     0.6652   0.4997   7.3577 (   0   10   15)   0     0.7830   0.6357    9  12
( 4676 1ojg_A)  ( 3904 1mc0_A)     0.4444   0.4444   5.2606 (   0    3    6)   0     0.7764   0.7764    9   9
( 4676 1ojg_A)  ( 3961 1mkm_A)     0.4439   0.3635   9.3455 (   0    3    6)   0     0.7466   0.6243    9  11
( 4676 1ojg_A)  ( 4177 1n9l_A)     0.5555   0.6250   3.3344 (   0    5   10)   0     0.5555   0.6250    9   8
( 4676 1ojg_A)  ( 4366 1nrj_A)     0.3936   0.3671   6.2990 (   1    5    6)   0     0.6663   0.5998    9  10
( 4676 1ojg_A)  ( 4420 1nwz_A)     0.7771   0.6361   5.0007 (   0   14   21)   0     0.7771   0.6361    9  11
( 4676 1ojg_A)  ( 4674 1oj5_A)     0.5555   0.5555   3.7882 (   0    7   10)   0     0.6666   0.6666    9   9
( 4676 1ojg_A)  ( 4676 1ojg_A)     1.0000   1.0000   0.0000 (   0   32   36)   0     1.0000   1.0000    9   9
( 4676 1ojg_A)  ( 4856 1p0z_A)     0.8829   0.7964   3.1840 (   1   22   28)   0     0.8829   0.7964    9  10
( 4676 1ojg_A)  ( 4938 1p97_A)     0.3769   0.3907   4.6535 (   1    4   10)   0     0.5288   0.5684    9   7
( 4676 1ojg_A)  ( 5065 1pne  )     0.5550   0.4543   7.3455 (   0    7   10)   0     0.6666   0.5454    9  11
( 4676 1ojg_A)  ( 6238 1vhm_A)     0.4444   0.4000   5.5327 (   0    4    6)   0     0.7192   0.6632    9  10
( 4676 1ojg_A)  ( 6584 3nul  )     0.5554   0.4999   5.5058 (   0    6   10)   0     0.7352   0.6737    9  10

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