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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4938 1p97_A)  (  100 1acf  )     0.7136   0.4166   5.5678 (   0    6   10)   0     0.8553   0.4999    7  12
( 4938 1p97_A)  (  496 1byw_A)     0.9998   0.8749   2.8449 (   0   15   21)   0     0.9998   0.8749    7   8
( 4938 1p97_A)  ( 1279 1ew0_A)     0.9990   0.6998   4.0193 (   0   14   21)   0     0.9990   0.6998    7  10
( 4938 1p97_A)  ( 1402 1f5m_A)     0.7140   0.4545   4.3538 (   0    2   10)   0     0.7141   0.4545    7  11
( 4938 1p97_A)  ( 1985 1gw5_M)     0.7134   0.5553   6.0206 (   0    5   10)   0     0.7134   0.5553    7   9
( 4938 1p97_A)  ( 1986 1gw5_S)     0.7132   0.4998   6.2736 (   0    5   10)   0     0.7132   0.4998    7  10
( 4938 1p97_A)  ( 2072 1h3q_A)     0.7135   0.5553   5.8179 (   0    8   10)   0     0.7135   0.5553    7   9
( 4938 1p97_A)  ( 2139 1h8m_A)     0.5707   0.4996   7.5422 (   0    2    6)   0     0.5707   0.4996    7   8
( 4938 1p97_A)  ( 2472 1ifq_A)     0.7130   0.6243   6.5273 (   0    4   10)   0     0.7130   0.6243    7   8
( 4938 1p97_A)  ( 2727 1j3w_A)     0.7136   0.6246   5.6447 (   0    3   10)   0     0.7136   0.6246    7   8
( 4938 1p97_A)  ( 3527 1l3l_A)     0.8565   0.5000   4.3564 (   0    9   15)   0     0.8565   0.5147    7  12
( 4938 1p97_A)  ( 3652 1ll8_A)     0.8538   0.8538   6.6029 (   0    8   15)   0     0.8538   0.8538    7   7
( 4938 1p97_A)  ( 3903 1mc0_A)     0.5713   0.3333   4.8906 (   0    4    6)   0     0.7139   0.4166    7  12
( 4938 1p97_A)  ( 3904 1mc0_A)     0.7140   0.5555   4.3744 (   0    3   10)   0     0.7140   0.5555    7   9
( 4938 1p97_A)  ( 3961 1mkm_A)     0.5712   0.3636   5.6765 (   0    4    6)   0     0.5712   0.3636    7  11
( 4938 1p97_A)  ( 4177 1n9l_A)     0.9997   0.8748   2.9772 (   0   14   21)   0     0.9997   0.8748    7   8
( 4938 1p97_A)  ( 4366 1nrj_A)     0.8546   0.5996   6.1588 (   0    8   15)   0     0.8546   0.5996    7  10
( 4938 1p97_A)  ( 4420 1nwz_A)     0.9996   0.6363   3.2903 (   0   12   21)   0     0.9996   0.6363    7  11
( 4938 1p97_A)  ( 4674 1oj5_A)     0.8554   0.6662   5.6078 (   0    8   15)   0     0.8554   0.6662    7   9
( 4938 1p97_A)  ( 4676 1ojg_A)     0.3907   0.3769   4.6535 (   1    4   10)   0     0.5684   0.5288    7   9
( 4938 1p97_A)  ( 4856 1p0z_A)     0.8569   0.6000   3.5049 (   0    9   15)   0     0.9045   0.6807    7  10
( 4938 1p97_A)  ( 4938 1p97_A)     1.0000   1.0000   0.0000 (   0   15   21)   0     1.0000   1.0000    7   7
( 4938 1p97_A)  ( 5065 1pne  )     0.7138   0.4545   5.1349 (   0    6   10)   0     0.8550   0.5452    7  11
( 4938 1p97_A)  ( 6238 1vhm_A)     0.7139   0.4999   4.7160 (   0    3   10)   0     0.7139   0.4999    7  10
( 4938 1p97_A)  ( 6584 3nul  )     0.7138   0.4999   4.9867 (   0    2   10)   0     0.7138   0.4999    7  10

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