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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6238 1vhm_A)  (  100 1acf  )     0.7997   0.6666   3.8826 (   0   16   28)   0     0.7997   0.6666   10  12
( 6238 1vhm_A)  (  496 1byw_A)     0.1970   0.1987   7.4302 (   1    2    6)   0     0.3997   0.4992   10   8
( 6238 1vhm_A)  ( 1279 1ew0_A)     0.6988   0.6988   6.5595 (   0   14   21)   0     0.6988   0.6988   10  10
( 6238 1vhm_A)  ( 1402 1f5m_A)     0.9999   0.9090   2.3812 (   0   30   45)   0     0.9999   0.9090   10  11
( 6238 1vhm_A)  ( 1985 1gw5_M)     0.3998   0.4442   7.9296 (   0    5    6)   0     0.7997   0.8883   10   9
( 6238 1vhm_A)  ( 1986 1gw5_S)     0.3999   0.3999   7.1430 (   0    5    6)   0     0.8977   0.8977   10  10
( 6238 1vhm_A)  ( 2072 1h3q_A)     0.6993   0.7766   5.7721 (   0   14   21)   0     0.7995   0.8881   10   9
( 6238 1vhm_A)  ( 2139 1h8m_A)     0.5996   0.7489   5.9361 (   0   11   15)   0     0.6993   0.8729   10   8
( 6238 1vhm_A)  ( 2472 1ifq_A)     0.6997   0.8740   4.8137 (   0   14   21)   0     0.7994   0.9983   10   8
( 6238 1vhm_A)  ( 2727 1j3w_A)     0.7995   0.9986   4.3597 (   0   17   28)   0     0.7995   0.9986   10   8
( 6238 1vhm_A)  ( 3527 1l3l_A)     0.8994   0.7498   4.0669 (   0   23   36)   0     0.8994   0.7498   10  12
( 6238 1vhm_A)  ( 3652 1ll8_A)     0.5733   0.7367   5.8304 (   1    9   15)   0     0.5733   0.7367   10   7
( 6238 1vhm_A)  ( 3903 1mc0_A)     0.8995   0.7498   3.8023 (   0   26   36)   0     0.8995   0.7498   10  12
( 6238 1vhm_A)  ( 3904 1mc0_A)     0.7998   0.8885   3.5931 (   0   17   28)   0     0.7998   0.8885   10   9
( 6238 1vhm_A)  ( 3961 1mkm_A)     0.8999   0.8181   2.3205 (   0   25   36)   0     0.8999   0.8181   10  11
( 6238 1vhm_A)  ( 4177 1n9l_A)     0.1970   0.1987   7.4418 (   1    2    6)   0     0.5385   0.6075   10   8
( 6238 1vhm_A)  ( 4366 1nrj_A)     0.6998   0.6998   4.3626 (   0   12   21)   0     0.8955   0.8955   10  10
( 6238 1vhm_A)  ( 4420 1nwz_A)     0.6998   0.6362   4.3693 (   0   11   21)   0     0.7994   0.7269   10  11
( 6238 1vhm_A)  ( 4674 1oj5_A)     0.4999   0.5555   4.6209 (   0    7   10)   0     0.6993   0.7765   10   9
( 6238 1vhm_A)  ( 4676 1ojg_A)     0.4000   0.4444   5.5327 (   0    4    6)   0     0.6632   0.7192   10   9
( 6238 1vhm_A)  ( 4856 1p0z_A)     0.4998   0.4998   6.2945 (   0    7   10)   0     0.7841   0.7841   10  10
( 6238 1vhm_A)  ( 4938 1p97_A)     0.4999   0.7139   4.7160 (   0    3   10)   0     0.4999   0.7139   10   7
( 6238 1vhm_A)  ( 5065 1pne  )     0.7997   0.7271   3.7747 (   0   15   28)   0     0.7997   0.7271   10  11
( 6238 1vhm_A)  ( 6238 1vhm_A)     1.0000   1.0000   0.0000 (   0   33   45)   0     1.0000   1.0000   10  10
( 6238 1vhm_A)  ( 6584 3nul  )     0.7997   0.7997   3.9683 (   0   13   28)   0     0.7997   0.7997   10  10

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