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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6584 3nul  )  (  100 1acf  )     0.9999   0.8333   1.4722 (   0   31   45)   0     0.9999   0.8333   10  12
( 6584 3nul  )  (  496 1byw_A)     0.2801   0.2910   7.3536 (   1    3    6)   0     0.5999   0.7496   10   8
( 6584 3nul  )  ( 1279 1ew0_A)     0.6998   0.6998   3.9256 (   0   15   21)   0     0.6998   0.6998   10  10
( 6584 3nul  )  ( 1402 1f5m_A)     0.7996   0.7270   4.1693 (   0   13   28)   0     0.7996   0.7270   10  11
( 6584 3nul  )  ( 1985 1gw5_M)     0.4718   0.5109   5.6605 (   1    7   10)   0     0.7996   0.8881   10   9
( 6584 3nul  )  ( 1986 1gw5_S)     0.4999   0.4999   5.3341 (   0    6   10)   0     0.7995   0.7995   10  10
( 6584 3nul  )  ( 2072 1h3q_A)     0.5999   0.6666   3.8847 (   0    4   15)   0     0.5999   0.6666   10   9
( 6584 3nul  )  ( 2139 1h8m_A)     0.4000   0.4999   5.4477 (   0    3    6)   0     0.5995   0.7486   10   8
( 6584 3nul  )  ( 2472 1ifq_A)     0.4999   0.6246   5.8038 (   0    5   10)   0     0.7994   0.9983   10   8
( 6584 3nul  )  ( 2727 1j3w_A)     0.7998   0.9995   3.4439 (   0   16   28)   0     0.7998   0.9995   10   8
( 6584 3nul  )  ( 3527 1l3l_A)     0.7990   0.6663   5.2765 (   0   15   28)   0     0.7992   0.6663   10  12
( 6584 3nul  )  ( 3652 1ll8_A)     0.1970   0.1993   8.0387 (   2    4    6)   0     0.1970   0.1993   10   7
( 6584 3nul  )  ( 3903 1mc0_A)     0.6999   0.5833   3.6742 (   0   12   21)   0     0.6999   0.5833   10  12
( 6584 3nul  )  ( 3904 1mc0_A)     0.7993   0.8877   4.9143 (   0   15   28)   0     0.7993   0.8877   10   9
( 6584 3nul  )  ( 3961 1mkm_A)     0.7996   0.7270   4.1923 (   0   15   28)   0     0.7996   0.7270   10  11
( 6584 3nul  )  ( 4177 1n9l_A)     0.3999   0.4998   6.3507 (   0    4    6)   0     0.5999   0.7497   10   8
( 6584 3nul  )  ( 4366 1nrj_A)     0.6998   0.6998   4.2998 (   0    9   21)   0     0.7989   0.7989   10  10
( 6584 3nul  )  ( 4420 1nwz_A)     0.4000   0.3636   5.2355 (   0    3    6)   0     0.6993   0.6359   10  11
( 6584 3nul  )  ( 4674 1oj5_A)     0.5815   0.6366   6.4829 (   1   10   15)   0     0.5815   0.6366   10   9
( 6584 3nul  )  ( 4676 1ojg_A)     0.4999   0.5554   5.5058 (   0    6   10)   0     0.6737   0.7352   10   9
( 6584 3nul  )  ( 4856 1p0z_A)     0.4999   0.4999   4.9885 (   0    8   10)   0     0.7895   0.7895   10  10
( 6584 3nul  )  ( 4938 1p97_A)     0.4999   0.7138   4.9867 (   0    2   10)   0     0.4999   0.7139   10   7
( 6584 3nul  )  ( 5065 1pne  )     0.9999   0.9090   2.4680 (   0   31   45)   0     0.9999   0.9090   10  11
( 6584 3nul  )  ( 6238 1vhm_A)     0.7997   0.7997   3.9683 (   0   13   28)   0     0.7997   0.7997   10  10
( 6584 3nul  )  ( 6584 3nul  )     1.0000   1.0000   0.0000 (   0   33   45)   0     1.0000   1.0000   10  10

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