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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2825 1jcu_A)  ( 2273 1hru_A)     0.6864   0.6864   2.6218 (   8   60   78)   0     0.6864   0.6864   14  14
( 2825 1jcu_A)  ( 2825 1jcu_A)     1.0000   1.0000   0.0000 (   0   78   91)   0     1.0000   1.0000   14  14
( 2825 1jcu_A)  ( 3173 1k4i_A)     0.4273   0.3743   4.7359 (   1   13   15)   0     0.5079   0.4779   14  16
( 2825 1jcu_A)  ( 3200 1k7j_A)     0.9263   0.8113   2.9337 (   2   60   78)   0     0.9263   0.8113   14  16
( 2825 1jcu_A)  ( 5134 1pvy_A)     0.3192   0.3142   5.4423 (  14   45   55)   0     0.3688   0.3142   14  19

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