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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2909 1jj2_L)  ( 2909 1jj2_L)     1.0000   1.0000   0.0000 (   0   48   55)   0     1.0000   1.0000   11  11
( 2909 1jj2_L)  ( 2915 1jj2_R)     0.5454   0.8567   4.0041 (   0   10   15)   0     0.5454   0.8567   11   7
( 2909 1jj2_L)  ( 4159 1n88_A)     0.5340   0.8406   3.8159 (   1   10   15)   0     0.5340   0.8406   11   6

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