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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1396 1f46_A)  (  133 1ais_A)     0.6664   0.9980   4.8051 (   0    7   15)   0     0.6664   0.9980    9   6
( 1396 1f46_A)  ( 1211 1em2_A)     0.7768   0.5383   5.4827 (   0   12   21)   0     0.8866   0.6150    9  13
( 1396 1f46_A)  ( 1396 1f46_A)     1.0000   1.0000   0.0000 (   0   28   36)   0     1.0000   1.0000    9   9
( 1396 1f46_A)  ( 1558 1fm4_A)     0.7771   0.6996   5.0167 (   0   14   21)   0     0.7771   0.6996    9  10
( 1396 1f46_A)  ( 3050 1jss_A)     0.7767   0.5383   5.5847 (   0   10   21)   0     0.8865   0.6150    9  13
( 1396 1f46_A)  ( 3262 1kcm_A)     0.7770   0.4375   5.1932 (   0   10   21)   0     0.7770   0.4375    9  16
( 1396 1f46_A)  ( 3673 1ln1_A)     0.5536   0.3332   9.9552 (   0    8   10)   0     0.8846   0.5330    9  15
( 1396 1f46_A)  ( 3819 1m3q_A)     0.7599   0.7599   4.3439 (   1   14   21)   0     0.7599   0.7599    9   9
( 1396 1f46_A)  ( 4002 1mpg_A)     0.7774   0.6997   4.4499 (   0   12   21)   0     0.7774   0.6997    9  10
( 1396 1f46_A)  ( 4248 1nh2_A)     0.6666   0.7498   3.8842 (   0    7   15)   0     0.6666   0.7498    9   8
( 1396 1f46_A)  ( 4249 1nh2_A)     0.6663   0.9974   5.1140 (   0    8   15)   0     0.6663   0.9974    9   6
( 1396 1f46_A)  ( 4542 1o7n_A)     0.2861   0.1693   8.1518 (   1    3    6)   0     0.7533   0.3454    9  23
( 1396 1f46_A)  ( 4904 1p5d_X)     0.6665   0.8564   4.4686 (   0    7   15)   0     0.6665   0.8564    9   7
( 1396 1f46_A)  ( 5264 1q9u_A)     0.6664   0.5454   4.6070 (   0    9   15)   0     0.8872   0.7267    9  11
( 1396 1f46_A)  ( 6046 1ul7_A)     0.6666   0.9997   2.8676 (   0    9   15)   0     0.6666   0.9997    9   6
( 1396 1f46_A)  ( 6196 1v8c_A)     0.7594   0.9412   5.5130 (   1   14   21)   0     0.7594   0.9412    9   7
( 1396 1f46_A)  ( 6284 1vjh_A)     0.7775   0.8744   4.1291 (   0   13   21)   0     0.7775   0.8744    9   8
( 1396 1f46_A)  ( 6588 3pmg_A)     0.7347   0.7347   5.6998 (   1   11   21)   0     0.7347   0.7347    9   9

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